Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19540 112 / 2e-30 INDH, INDL IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) AT3G24430 62 / 1e-11 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) AT2G45490 60 / 5e-11 ATAUR3 ataurora3 (.1) AT5G50960 51 / 6e-08 ATNBP35, NBP35 nucleotide binding protein 35 (.1) AT2G25880 50 / 7e-08 ATAUR2 ataurora2 (.1.2) AT4G32830 50 / 1e-07 ATAUR1 ataurora1 (.1) AT2G23070 48 / 7e-07 Protein kinase superfamily protein (.1) AT3G50000 48 / 8e-07 ATCKA2, CKA2 "casein kinase II, alpha chain 2", casein kinase II, alpha chain 2 (.1) AT5G67380 48 / 8e-07 ATCKA1, CKA1 casein kinase alpha 1 (.1.2) AT1G76540 47 / 1e-06 CDKB2;1 cyclin-dependent kinase B2;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019468 [exp] 199 / 2e-66 AT4G19540 117 / 2e-32 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10018779 [exp] 122 / 1e-33 AT4G19540 401 / 9e-140 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10024867 [exp] 122 / 2e-33 AT4G19540 402 / 1e-139 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10025895 [exp] 114 / 4e-32 AT4G19540 107 / 9e-28 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10006266 [exp] 68 / 5e-14 AT2G45490 427 / 1e-152 ataurora3 (.1) Lus10020580 [exp] 68 / 5e-14 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10034380 [exp] 62 / 2e-12 AT2G45490 60 / 5e-11 ataurora3 (.1) Lus10019395 [exp] 62 / 1e-11 AT3G24430 745 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10043252 [exp] 62 / 1e-11 AT3G24430 817 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G220500 [exp] 112 / 8e-31 AT4G19540 414 / 1e-146 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.002G042600 [exp] 112 / 1e-30 AT4G19540 422 / 5e-150 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.018G076600 [exp] 62 / 1e-11 AT3G24430 835 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Potri.006G080500 [exp] 61 / 2e-11 AT2G45490 470 / 2e-169 ataurora3 (.1) Potri.001G336900 [exp] 52 / 3e-08 AT5G50960 571 / 0.0 nucleotide binding protein 35 (.1) Potri.006G235000 [exp] 50 / 9e-08 AT4G32830 553 / 0.0 ataurora1 (.1) Potri.007G054100 [exp] 49 / 2e-07 AT2G23070 638 / 0.0 Protein kinase superfamily protein (.1) Potri.007G052800 [exp] 49 / 2e-07 AT5G67380 632 / 0.0 casein kinase alpha 1 (.1.2) Potri.005G145900 [exp] 49 / 3e-07 AT5G67380 620 / 0.0 casein kinase alpha 1 (.1.2) Potri.005G146000 [exp] 49 / 5e-07 AT2G23070 625 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0023 [flax] [poplar] P-loop_NTPase PF01656 [flax] [poplar] CbiA CobQ/CobB/MinD/ParA nucleotide binding domain
Representative CDS sequence Show only first row Show all	>Lus10011951 pacid=23146521 polypeptide=Lus10011951 locus=Lus10011951.g ID=Lus10011951.BGIv1.0 annot-version=v1.0 ATGCTCTTCCCTCTCTTACCCAGCAAGCTGGCAGCTCTCTCCCTGCAGCCTCTGGCAATACCGTTGCACGATTTTCAGACCTGCAACATTTCCAGACAAA TTGATTCGATATCAAAGCTACGGCTTGACGGAGTTAAGGACGTCATCGCCGTTGCTTCTAGCAAAGGAGGCGTTGGCAAATCCACCACTGCTGTAAACTT GGTTGTTGCCCTTGCGAACAAGTGCAATTTGAAGGTCGGCTTGCTCGATGCTGATGTCTATGGACCTTCTGTCCCTATTATGATGAAGATCGATCAGAAG CCAGAGTATCACCGAAGGGTTTCTTATGGTTGTTTCTCTGTCATTCAGTATATTCCGAGTCTTGCATATGCATTAGCTTATTGCCATGGAAAGGATGTGA TCCATAGAGACATTAAGCCGCATAATCTATTGCTGGATCATGAGGTAAGCCAATTTGATACTGTAATTGCTTTCACTACTCCGAAAATGTGA
AA sequence Show only first row Show all	>Lus10011951 pacid=23146521 polypeptide=Lus10011951 locus=Lus10011951.g ID=Lus10011951.BGIv1.0 annot-version=v1.0 MLFPLLPSKLAALSLQPLAIPLHDFQTCNISRQIDSISKLRLDGVKDVIAVASSKGGVGKSTTAVNLVVALANKCNLKVGLLDADVYGPSVPIMMKIDQK PEYHRRVSYGCFSVIQYIPSLAYALAYCHGKDVIHRDIKPHNLLLDHEVSQFDTVIAFTTPKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10011951 [exp]	0	1
					Lus10011832 [exp]	2.2	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	3.7	1.0000
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	4.9	1.0000
					Lus10027689 [exp]	4.9	1.0000
					Lus10027991 [exp]	9.2	1.0000
					Lus10009727 [exp]	9.9	1.0000
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005236 [exp]	10.6	1.0000
AT3G49720			unknown protein		Lus10012481 [exp]	13.5	1.0000
					Lus10003082 [exp]	13.8	1.0000
					Lus10011642 [exp]	13.9	1.0000

Compare expression of checked genes

Lus10011951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.