Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19520 217 / 1e-64 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT5G12080 199 / 9e-58 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT1G78610 126 / 7e-32 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT3G14810 121 / 5e-30 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT2G17010 117 / 7e-29 Mechanosensitive ion channel family protein (.1) AT1G53470 115 / 5e-28 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT2G17000 106 / 5e-25 Mechanosensitive ion channel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027617 [exp] 585 / 0 AT5G12080 839 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10016423 [exp] 263 / 1e-81 AT5G12080 786 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10019694 [exp] 258 / 8e-80 AT5G12080 778 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10006347 [exp] 153 / 3e-41 AT5G12080 659 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10022654 [exp] 124 / 3e-31 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10042499 [exp] 123 / 1e-30 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10038148 [exp] 120 / 1e-29 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10012516 [exp] 117 / 1e-29 AT1G78610 336 / 9e-108 mechanosensitive channel of small conductance-like 6 (.1) Lus10002960 [exp] 111 / 6e-27 AT5G12080 605 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222500 [exp] 305 / 2e-97 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G144100 [exp] 181 / 4e-51 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.004G178900 [exp] 132 / 8e-34 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 122 / 1e-30 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 122 / 2e-30 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.013G073000 [exp] 120 / 9e-30 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.005G246600 [exp] 119 / 2e-29 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.013G072800 [exp] 110 / 2e-26 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011952 pacid=23146520 polypeptide=Lus10011952 locus=Lus10011952.g ID=Lus10011952.BGIv1.0 annot-version=v1.0 ATGACATCGTTAGAGAAGAAACCCAGCAATGGCGACCAAGTTGTCATAACATTCTCAACAACACCACCCAGCCCAAAGGTTGAAACTCCAATCCGCCCTG CGGCCACGGAAGCTCTTGGAGGTAGCAGGCAAAGCTTTCCTAATTCACCCATCAAAGACTCTTCTTTGCCAGCGAGCTGTAATTCACCTGAGATTTCAAG GTTCAGTCCCAGCCCCAACAAGCCACCCAAGATCCCCACTACAAATGAAAACCTTCTCAGGAGAAGGTCATTCTCCAGGTCATTATATTCAAAACCCAAG TCTAGGTTCGGAGAGCAACCTGTTACTGTTGATGCCAACGCACTTGATAATCATACTACATCTACTCTGCAGCATCATTTTGCTTCTGGTTCATCACCCT ATAGGAATTCCCCCAATGCCAAGTCTCCATCTGTTATTAGGATAACACAGAAAACACCCTTGATGTCCTCTCCTGGAAAAATCACGGTCAAGGAGGAAGA TGAGGACGAGGAGGAGGAAGAGGAGGAGCAGGAGAGGGAGTTTGTTCGCCGGGTTGAGATTCACAAACGGAAGAGTAAGAGAGGTAAAACTATGGCCAAG TATGTAATTCAGTGGCTGGCAATTTTGTCCATTGTTGGTTGCTTGATAGCTAGCTTGACTATTGATAAGCTGGAGAGGACCAAAATCTGGGGGTTAGAGT TTTGGAAATGGTGCGTTCTTGTGATGGTGATCATGTTCGGGTTATTGGTCACAAGTTGGTTTATGCACATTGTGGTTTTCCTGATTGAGATTAACTTCTT GCTGAGGAAGAAAGTTTTGTACTTTGTTCACGGCTTGAAGAAGAGTGTTCAGGTGTTTGTTTGGATAGCTTTGGTTCTTGCAACTTGGTCTCTTTTATTC AGAGGGGAAGTTGACGCTTCAAAGACCGCTACCAAGATTCTAGACACGGTTACATGGACTCTCGTCTCACTTCTTATTGGATCGTTCTTGTGGCTGGGGG GGGGTGGGGTGGGTGTGGTATTGGGTTTGTGCTAA
AA sequence Show only first row Show all	>Lus10011952 pacid=23146520 polypeptide=Lus10011952 locus=Lus10011952.g ID=Lus10011952.BGIv1.0 annot-version=v1.0 MTSLEKKPSNGDQVVITFSTTPPSPKVETPIRPAATEALGGSRQSFPNSPIKDSSLPASCNSPEISRFSPSPNKPPKIPTTNENLLRRRSFSRSLYSKPK SRFGEQPVTVDANALDNHTTSTLQHHFASGSSPYRNSPNAKSPSVIRITQKTPLMSSPGKITVKEEDEDEEEEEEEQEREFVRRVEIHKRKSKRGKTMAK YVIQWLAILSIVGCLIASLTIDKLERTKIWGLEFWKWCVLVMVIMFGLLVTSWFMHIVVFLIEINFLLRKKVLYFVHGLKKSVQVFVWIALVLATWSLLF RGEVDASKTATKILDTVTWTLVSLLIGSFLWLGGGGVGVVLGLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19520		ATMSL9, MSL9	mechanosensitive channel of sm...		Lus10011952 [exp]	0	1
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017413 [exp]	4.2	0.9047
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029643 [exp]	4.9	0.8866
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10015928 [exp]	5.3	0.8922
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10011953 [exp]	11.2	0.8639
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042899 [exp]	13.7	0.8912
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10034354 [exp]	15.2	0.8224
AT3G44330			unknown protein		Lus10013307 [exp]	17.7	0.8703
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10022043 [exp]	18.7	0.8829
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10010483 [exp]	29.8	0.8848
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038008 [exp]	30.2	0.8752

Compare expression of checked genes

Lus10011952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.