Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12080 273 / 2e-87 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 247 / 1e-77 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G53470 171 / 6e-49 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT3G14810 160 / 3e-45 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT2G17010 159 / 7e-45 Mechanosensitive ion channel family protein (.1) AT2G17000 151 / 5e-42 Mechanosensitive ion channel family protein (.1) AT1G78610 149 / 2e-41 MSL6 mechanosensitive channel of small conductance-like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027617 [exp] 402 / 4e-135 AT5G12080 839 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10019694 [exp] 328 / 1e-108 AT5G12080 778 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10016423 [exp] 320 / 7e-106 AT5G12080 786 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10002960 [exp] 226 / 2e-71 AT5G12080 605 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10006347 [exp] 226 / 2e-69 AT5G12080 659 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10036586 [exp] 199 / 1e-59 AT5G12080 573 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10036587 [exp] 198 / 2e-59 AT5G12080 549 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10005556 [exp] 189 / 5e-57 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10013692 [exp] 175 / 1e-53 AT1G53470 496 / 6e-170 mechanosensitive channel of small conductance-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222500 [exp] 310 / 1e-101 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G144100 [exp] 223 / 3e-68 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 203 / 2e-61 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 196 / 1e-58 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.001G384100 [exp] 163 / 2e-46 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 162 / 6e-46 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.004G178900 [exp] 148 / 4e-41 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 133 / 8e-36 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011953 pacid=23146512 polypeptide=Lus10011953 locus=Lus10011953.g ID=Lus10011953.BGIv1.0 annot-version=v1.0 ATGGCACAGTTTCACAAAATCAAGCAAGAAAAGGTTTCAGCTTGGACAATGAAAGTTTTGGTGGATGCAGTCACTAAATCCGGGCTCTCGACGATTTCGA ATTCGTTGGATGAGAGCCGCCATGATGCAGGAGGAGGAAATACAGATCAAGAGATTACTAACGAACTGGATGCAACTGTTGCAGGATTACGCATTTTCAG AAACGTTGCTCCTCGTCGTTGCAAGTACATTGAGGAAGAGGACTTTTTGAGATTTATGATCAAGGAAGAGGTGGATCTCTTCTTTCCGCTGATTGAAGGT TCTGAAAGTGGAAAGGTTGACAAAAAAGCCTTCACTGAATGGGTGGTGAAGGTTTACAATGGCCGCACAGCACTTGCACACGCCCTGAACGATACGAAAA CGGCCGTTAAACAGCTTAACAAATTAGTGACAGGTATTCTAATTCTGGTGACAATTGTTATCTGGCTTCTGCTTATGCAGATCGCTACAACGAAAGTGCT GGTGTTCCTCTCGTCGCAGCTGGTGTTGGCTGCTTTTATGTTTGGGAACACTTGCAAGAACATATTCGAGGCCATCATATTCGTATTCGTGATGCATCCA TTTGATGTGGGGGACCGTTGTGTTGTGGATGGCGTCCCAGTAAGTTAG
AA sequence Show only first row Show all	>Lus10011953 pacid=23146512 polypeptide=Lus10011953 locus=Lus10011953.g ID=Lus10011953.BGIv1.0 annot-version=v1.0 MAQFHKIKQEKVSAWTMKVLVDAVTKSGLSTISNSLDESRHDAGGGNTDQEITNELDATVAGLRIFRNVAPRRCKYIEEEDFLRFMIKEEVDLFFPLIEG SESGKVDKKAFTEWVVKVYNGRTALAHALNDTKTAVKQLNKLVTGILILVTIVIWLLLMQIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHP FDVGDRCVVDGVPVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10011953 [exp]	0	1
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10015928 [exp]	1.7	0.9047
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10000542 [exp]	7.3	0.8857
AT5G19520		ATMSL9, MSL9	mechanosensitive channel of sm...		Lus10011952 [exp]	11.2	0.8639
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10009323 [exp]	15.0	0.8632
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028223 [exp]	15.3	0.8657
AT4G24710			P-loop containing nucleoside t...		Lus10043321 [exp]	15.7	0.8728
AT3G52270			Transcription initiation facto...		Lus10040084 [exp]	18.9	0.8469
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10027545 [exp]	20.1	0.8702
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10010215 [exp]	22.8	0.8480
AT1G10180			unknown protein		Lus10018297 [exp]	25.8	0.8577

Compare expression of checked genes

Lus10011953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.