Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21430 99 / 8e-26 NdhU, CRRL NADH dehydrogenase-like complex U, CHLORORESPIRATORY REDUCTION L, Chaperone DnaJ-domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027616 [exp] 225 / 1e-74 AT5G21430 174 / 8e-55 NADH dehydrogenase-like complex U, CHLORORESPIRATORY REDUCTION L, Chaperone DnaJ-domain superfamily protein (.1.2) Lus10007125 [exp] 115 / 8e-34 ND / Lus10016000 [exp] 114 / 2e-33 ND / Lus10025327 [exp] 107 / 2e-28 ND / Lus10006284 [exp] 109 / 3e-28 ND / Lus10034956 [exp] 99 / 7e-26 ND 39 / 0.002 Lus10009178 [exp] 88 / 5e-23 ND / Lus10009893 [exp] 84 / 1e-21 ND / Lus10033175 [exp] 83 / 5e-21 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G221900 [exp] 92 / 4e-23 AT5G21430 190 / 3e-61 NADH dehydrogenase-like complex U, CHLORORESPIRATORY REDUCTION L, Chaperone DnaJ-domain superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011955 pacid=23146503 polypeptide=Lus10011955 locus=Lus10011955.g ID=Lus10011955.BGIv1.0 annot-version=v1.0 ATGTACTTCAGCACGCCTAGTGTGGTGGGAGCGCCTGACGGTAACGCGTCCCCGGAGTACATGGCGTGGTACCTCGACCGTACACACCCCAGATCGTCCC CATCCGTGCACCTGATATGCCACATCCACCTATGGCTCCGGAGCAGGATATGCGATCTTACTGTGCTGGGATGGCCCCCCTGTATGCGTCAGGTAGTAGG GCCCAGTTCATTGAGCGGGCGGGAGAGTACTACGATATCATGGAGAGCATGCGCGGGTTGTGGTCTCACCATTACAGAAGTAGATTACTACGCCGTACTA GAGCTTCCAAGAGGATGTTCCTATGACGAGGTTGAAATTGGATATAAGAAGATGGTAGAGCAACTGCTCAACAAGGGACATGAGGAGGAACAACTCAGTA ACGAAATGGCAATGCTCAAGGATTGGAGCTTGGCGAGGACTGATAATCCTCAACGATACAGTTGGCCATCTCAGGCCGACATCACACAGTTACCCTCACC CGAAACCCCCCCTATCCTCCAGGAACCGGAGGACGAAGGAATAACAAGAGCAGTGGGTTACTTTTTCTTAGGGTGGTTTGCCTTATCAGCCGTCTTGTCC ATAGCACTCAACCGATGA
AA sequence Show only first row Show all	>Lus10011955 pacid=23146503 polypeptide=Lus10011955 locus=Lus10011955.g ID=Lus10011955.BGIv1.0 annot-version=v1.0 MYFSTPSVVGAPDGNASPEYMAWYLDRTHPRSSPSVHLICHIHLWLRSRICDLTVLGWPPCMRQVVGPSSLSGRESTTISWRACAGCGLTITEVDYYAVL ELPRGCSYDEVEIGYKKMVEQLLNKGHEEEQLSNEMAMLKDWSLARTDNPQRYSWPSQADITQLPSPETPPILQEPEDEGITRAVGYFFLGWFALSAVLS IALNR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Lus10011955 [exp]	0	1
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Lus10008780 [exp]	4.9	0.8320
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000405 [exp]	10.0	0.7546
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Lus10009203 [exp]	17.9	0.8105
					Lus10029497 [exp]	19.1	0.6333
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Lus10007429 [exp]	20.6	0.8128
AT3G01500		SABP3, ATBCA1, ...	ARABIDOPSIS THALIANA SALICYLIC...		Lus10022235 [exp]	21.2	0.8125
AT1G24110			Peroxidase superfamily protein...		Lus10004234 [exp]	22.2	0.7817
					Lus10014735 [exp]	23.7	0.6612
AT3G47430		PEX11B	peroxin 11B (.1)		Lus10027213 [exp]	26.5	0.7849
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039166 [exp]	31.2	0.6397

Compare expression of checked genes

Lus10011955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.