Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19480 377 / 3e-130 NFA2, NFA02, NAP1;2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) AT4G26110 369 / 6e-127 NAP1;1, ATNAP1;1 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) AT5G56950 367 / 3e-126 NFA3, NFA03, NAP1;3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) AT3G13782 246 / 2e-79 NFA4, NFA04, NAP1;4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, nucleosome assembly protein1;4 (.1) AT1G18800 59 / 7e-10 NRP2 NAP1-related protein 2 (.1) AT1G74560 56 / 1e-08 NRP1 NAP1-related protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011957 [exp] 448 / 1e-158 AT2G19480 449 / 2e-158 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10027615 [exp] 410 / 5e-144 AT2G19480 385 / 3e-134 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011959 [exp] 372 / 5e-127 AT2G19480 319 / 5e-106 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10037630 [exp] 318 / 3e-107 AT2G19480 386 / 1e-133 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10015612 [exp] 320 / 6e-104 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10001235 [exp] 228 / 1e-72 AT4G26110 250 / 2e-81 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10042106 [exp] 219 / 5e-69 AT4G26110 242 / 1e-77 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10026197 [exp] 215 / 2e-67 AT4G26110 229 / 7e-73 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10001231 [exp] 209 / 2e-65 AT5G56950 229 / 6e-73 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148600 [exp] 389 / 1e-134 AT2G19480 447 / 1e-157 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.018G067800 [exp] 389 / 2e-134 AT2G19480 462 / 4e-163 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G021400 [exp] 263 / 2e-85 AT2G19480 286 / 2e-94 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036200 [exp] 266 / 3e-85 AT2G19480 285 / 3e-92 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036500 [exp] 261 / 4e-83 AT2G19480 280 / 5e-90 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040250 [exp] 264 / 3e-81 AT2G19480 280 / 9e-87 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040700 [exp] 249 / 3e-78 AT2G19480 287 / 7e-93 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.017G080700 [exp] 61 / 2e-10 AT1G18800 292 / 4e-100 NAP1-related protein 2 (.1) Potri.015G062700 [exp] 57 / 4e-09 AT1G18800 324 / 2e-112 NAP1-related protein 2 (.1) Potri.012G069100 [exp] 54 / 4e-08 AT1G18800 325 / 7e-113 NAP1-related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00956 [flax] [poplar] NAP Nucleosome assembly protein (NAP)
Representative CDS sequence Show only first row Show all	>Lus10011956 pacid=23146511 polypeptide=Lus10011956 locus=Lus10011956.g ID=Lus10011956.BGIv1.0 annot-version=v1.0 ATGAGCATCGACAAGATCGACATGGCCGATCTTACTGCTGCAGCTCTTAATGCCCAGGACCGTGATGGGCTTGTGAACGCACTCAAGGATAAGCTGCAAA ATTTGGCTGGTCAACACACTGATATGTTGGAGGCTTTAACCCCCAAAAGCCAACATGATGAGCTAGAAGCAAAATTCTTTGAGGAGAGGGCAGCCCTTGA AGCCAAATATCAAAAGCTGTACCAACCACTCTATACCCAGCGGTATGAAATTGTTAATGGTGTCTCCGAAGTGGAGGTATCCAAAGAAGAAGGGGATAAC AAGGATGAGGCTGTCGAAGAGAAAGGTGTTCCTGAGTTTTGGCTGCTTGCAATGAAGAACAATGAAGTCCTAGCAGAGGAGATTACCGAGAAGGATGAGG GAGCTCTAAAGTTCCTGAAAGATATTAAATGGAAGAGAGTTGAGGAGCCCAAAGGATTCAAGCTTGAGTTTTTCTTTGATACCAACCCTTATTTCAAGAA CACTGTCCTAACCAAGACATATCACATGATTGATGAAGATGATCCTATTCTTGAGAAAGCTATTGGGACTGAAATTGAATGGTATCCAGGGAAGTGCTTG ACTCAAAAGATCCTGAAGAAGAAGCCCAAAAAAGGATCTAAAAATGCTAAACCTATAACCAAAACAGAGGATTGTGAGAGCTTTTTTAACTTCTTCAGTC CTCCACAAGTCCCCGAGGATGATGAGGAGCTAGATGAAGATACTGCTGAAGAGCTTCAAAATCAGATGGAACAAGACTATGACATTGGGTCTACCATCCG GGACAAGATCATACCACATGCTGTGTCATGGTTTACTGGGGAGGCTGTTGAGGATGACGATGATGGGCTTGAACTGGACGTTACCGAAGATGACGAGGAT GATGAAGAGGATGAGGAGGATGAAGAGGAGGAGGATGATGATGAAGAAGAAGAAGAAGAAGGGAAGAAGGTAAGGTTTCCTTTGATATTTCATGGTCAAA AGAGTGGTAGGAGGACACAAGCTTCAGATGTTGAGAAGCAGGGTGAGCGGCCTGCAGAGTGCAAGCAGCAGTAA
AA sequence Show only first row Show all	>Lus10011956 pacid=23146511 polypeptide=Lus10011956 locus=Lus10011956.g ID=Lus10011956.BGIv1.0 annot-version=v1.0 MSIDKIDMADLTAAALNAQDRDGLVNALKDKLQNLAGQHTDMLEALTPKSQHDELEAKFFEERAALEAKYQKLYQPLYTQRYEIVNGVSEVEVSKEEGDN KDEAVEEKGVPEFWLLAMKNNEVLAEEITEKDEGALKFLKDIKWKRVEEPKGFKLEFFFDTNPYFKNTVLTKTYHMIDEDDPILEKAIGTEIEWYPGKCL TQKILKKKPKKGSKNAKPITKTEDCESFFNFFSPPQVPEDDEELDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAVEDDDDGLELDVTEDDED DEEDEEDEEEEDDDEEEEEEGKKVRFPLIFHGQKSGRRTQASDVEKQGERPAECKQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10011956 [exp]	0	1
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Lus10020615 [exp]	11.5	0.8967
AT2G19540			Transducin family protein / WD...		Lus10024403 [exp]	15.7	0.8953
AT4G39200			Ribosomal protein S25 family p...		Lus10040436 [exp]	24.2	0.8897
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10004743 [exp]	32.6	0.8891
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10015588 [exp]	35.2	0.8827
AT2G34570		MEE21	maternal effect embryo arrest ...		Lus10001157 [exp]	37.1	0.8749
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10017648 [exp]	37.4	0.8791
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10027503 [exp]	41.8	0.8757
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10010430 [exp]	52.0	0.8539
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10015123 [exp]	55.0	0.8711

Compare expression of checked genes

Lus10011956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.