Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19480 404 / 8e-141 NFA2, NFA02, NAP1;2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) AT5G56950 384 / 8e-133 NFA3, NFA03, NAP1;3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) AT4G26110 383 / 1e-132 NAP1;1, ATNAP1;1 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) AT3G13782 245 / 2e-79 NFA4, NFA04, NAP1;4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, nucleosome assembly protein1;4 (.1) AT1G18800 59 / 7e-10 NRP2 NAP1-related protein 2 (.1) AT1G74560 56 / 1e-08 NRP1 NAP1-related protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011956 [exp] 462 / 8e-164 AT2G19480 422 / 8e-148 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10027615 [exp] 425 / 8e-150 AT2G19480 385 / 3e-134 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10037630 [exp] 326 / 2e-110 AT2G19480 386 / 1e-133 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011959 [exp] 323 / 9e-108 AT2G19480 319 / 5e-106 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10015612 [exp] 327 / 8e-107 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10001235 [exp] 225 / 1e-71 AT4G26110 250 / 2e-81 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10026197 [exp] 221 / 1e-69 AT4G26110 229 / 7e-73 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10042106 [exp] 217 / 5e-68 AT4G26110 242 / 1e-77 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10001231 [exp] 211 / 6e-66 AT5G56950 229 / 6e-73 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148600 [exp] 421 / 2e-147 AT2G19480 447 / 1e-157 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.018G067800 [exp] 420 / 6e-147 AT2G19480 462 / 4e-163 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036200 [exp] 270 / 9e-87 AT2G19480 285 / 3e-92 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G021400 [exp] 266 / 1e-86 AT2G19480 286 / 2e-94 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036500 [exp] 265 / 1e-84 AT2G19480 280 / 5e-90 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040250 [exp] 268 / 6e-83 AT2G19480 280 / 9e-87 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040700 [exp] 252 / 1e-79 AT2G19480 287 / 7e-93 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.017G080700 [exp] 61 / 2e-10 AT1G18800 292 / 4e-100 NAP1-related protein 2 (.1) Potri.015G062700 [exp] 57 / 4e-09 AT1G18800 324 / 2e-112 NAP1-related protein 2 (.1) Potri.012G069100 [exp] 54 / 5e-08 AT1G18800 325 / 7e-113 NAP1-related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00956 [flax] [poplar] NAP Nucleosome assembly protein (NAP)
Representative CDS sequence Show only first row Show all	>Lus10011957 pacid=23146531 polypeptide=Lus10011957 locus=Lus10011957.g ID=Lus10011957.BGIv1.0 annot-version=v1.0 ATGAGCATAGACAAGACGAACATCAACATGGCCGATCTTACCGCTGCTCTTAATGCGGAGGATCGTGCTGGGCTTGTGAACGCACTCAAGGATAAGTTGC AAAATTTGGCTGGTCAACACACTGATATGTTGGAGAGTTTAAGCCCCAAAAGCCAACATGATGAGCTAGAAGCAAAATTCTTTGAGGAGAGGGCAGCCCT TGAAGCCAAATATCAAAAGCTGTACCAACCACTCTATACCCAGCGGTATGAAATTGTTAATGGTGTCTCCGAAGTGGAGGTATCCAAAGAAGAAGGGGAT AACAAGGATGAGGCTGTCGAAGAGAAAGGTGTTCCTGAGTTTTGGCTGCTTGCAATGAAGAACAATGAAGTCCTAGCAGAGGAGATTACCGAGAAGGACG AGGGAGCTCTAAAGTTCCTGAAAGATATTAAATGGAACAGAGTTGAGGAGCCCAAAGGATTCAAGCTTGAGTTTTTCTTTGATACCAACCCTTATTTCAA GAACACTGTCCTAACCAAGACATATCACATGATTGATGAAGATGATCCTATTCTTGAGAAAGCTATTGGGACCGAAATTGAATGGTATCCAGGGAAGTGC TTGACTCAAAAGATCCTGAAGAAGAAGCCCAAAAAAGGATCTAAAAATGCTAAACCTATAACCAAAACTGAGGATTGTGAGAGCTTTTTTAACTTCTTCA GTCCTCCACAAGTCCCCGAGGATGATGAGGAGCTAGATGAAGATACTGCTGAAGAGCTTCAAAATCAGATGGAACAAGACTATGACATTGGGTCTACGAT CAGGGACAAGATCATACCGCATGCTGTGTCATGGTTTACGGGGGAGGCTATTCAGGATGACGAAGATGGCCTTGAACTGGATGATGACGAGGATGATGAG GATGTTGATGAAGACGAGGATGATGATGAGGAAGATGATGATGAGGAGGATGATGACGATGATGAAGATGAAGGGAAGAAGAAGAAGAGTGGTAGCAAGA CACAAGTTTCAGAAGGTCAGCAACAGGGTGAGCGGCCTCCAGAGTGCAAGCAGCAGTGA
AA sequence Show only first row Show all	>Lus10011957 pacid=23146531 polypeptide=Lus10011957 locus=Lus10011957.g ID=Lus10011957.BGIv1.0 annot-version=v1.0 MSIDKTNINMADLTAALNAEDRAGLVNALKDKLQNLAGQHTDMLESLSPKSQHDELEAKFFEERAALEAKYQKLYQPLYTQRYEIVNGVSEVEVSKEEGD NKDEAVEEKGVPEFWLLAMKNNEVLAEEITEKDEGALKFLKDIKWNRVEEPKGFKLEFFFDTNPYFKNTVLTKTYHMIDEDDPILEKAIGTEIEWYPGKC LTQKILKKKPKKGSKNAKPITKTEDCESFFNFFSPPQVPEDDEELDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAIQDDEDGLELDDDEDDE DVDEDEDDDEEDDDEEDDDDDEDEGKKKKSGSKTQVSEGQQQGERPPECKQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10011957 [exp]	0	1
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10037938 [exp]	4.1	0.9002
AT1G43860			sequence-specific DNA binding ...		Lus10029749 [exp]	8.7	0.8800
AT3G22480		PDF2	prefoldin 2 (.1.2)		Lus10006117 [exp]	8.9	0.8748
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10037603 [exp]	11.4	0.8807
AT1G03330			Small nuclear ribonucleoprotei...		Lus10042686 [exp]	14.9	0.8755
AT4G22000			unknown protein		Lus10008487 [exp]	15.1	0.8795
AT2G46230			PIN domain-like family protein...		Lus10012649 [exp]	16.1	0.8704
AT3G22660			rRNA processing protein-relate...		Lus10037050 [exp]	17.0	0.8730
AT2G44860			Ribosomal protein L24e family ...		Lus10020552 [exp]	21.0	0.8644
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10015166 [exp]	21.2	0.8757

Compare expression of checked genes

Lus10011957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.