Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37370 503 / 1e-175 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37340 494 / 6e-172 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT5G36220 494 / 7e-172 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT4G37320 483 / 1e-167 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37330 474 / 3e-164 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37360 472 / 4e-163 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37400 469 / 5e-162 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT3G28740 466 / 9e-161 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT2G23190 464 / 1e-159 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT4G37430 462 / 2e-159 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027614 [exp] 764 / 0 AT4G37370 496 / 6e-174 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10020437 [exp] 545 / 0 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10018717 [exp] 457 / 3e-157 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024816 [exp] 454 / 8e-156 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024819 [exp] 436 / 9e-149 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10018711 [exp] 415 / 8e-141 AT4G37370 441 / 5e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024818 [exp] 414 / 3e-140 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024820 [exp] 408 / 5e-138 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10041643 [exp] 389 / 2e-130 AT4G37320 433 / 6e-148 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006000 [exp] 503 / 2e-175 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G008200 [exp] 489 / 6e-170 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.007G050000 [exp] 486 / 3e-169 AT4G37370 509 / 3e-178 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G143800 [exp] 479 / 3e-166 AT4G37370 539 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007000 [exp] 476 / 9e-165 AT4G37370 525 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007900 [exp] 471 / 8e-163 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.007G049900 [exp] 471 / 8e-163 AT4G37370 490 / 1e-170 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G144000 [exp] 471 / 9e-163 AT5G36220 496 / 6e-173 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Potri.008G205200 [exp] 466 / 5e-161 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G143900 [exp] 455 / 2e-156 AT4G37370 511 / 5e-179 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10011958 pacid=23146524 polypeptide=Lus10011958 locus=Lus10011958.g ID=Lus10011958.BGIv1.0 annot-version=v1.0 ATGGAGATCAATTACAGCAGCTACATGTCCATTTCCATTCTCCTGCTCATCGTGGCTTTCATCTTCCACCGCTCCAAAACTAACATTACCTACCGTCGTC CACCAAGCCCACCAGGCAGCCTTCCAATCATCGGCCACCTCCATCTTCTCAAACAACCCCTCCATCGTTCTCTTCACTTTCTCTCTCACAAACACGGCCC AATCATGTGGCTCAACTTCGGTTCACACCCTGTTGTAGTGGTCTCATCCTCCGAGGCAGCTGAAGAATGCTTTACCAAAAACGACATCACTCTCGCCAAC CGTCCCAATCACATGGTGGGAAAGCACATTGGGTACAACCACACCACAATGGTCCAGGCACCCTACGGGGACCATTGGCGCAACCTCCGCCGCATCGGAT CCCTTGAGATCTTCTCCTCCTCCCGCCTCAACAACTTCCTAGCCATCCGAGCTGACGAGGTCAAGCGCCTCATGTTGCGCCTTGTATCGTCGTCGTCGTC GTCGAATAATCACAGTAAGGTGGAGTTGAGGGGGATGCTTCAAGACTTAACGCTCAACAACATGTTGAGGATGATTGCCGGGAAGAGGTACTATGGGGAA TCCGTTGGAGATAAGGACGAGGCGGATGAGTTTAAGGAGATGATGGTGGAGGTCATGGGGATTGGATCAGGCAACCCTGCCAATTTCATACCCCTTTTGA AATGGGTTGGCTTTGGCGGCTTTGAGAGGAAGTTGATCCGCCTTTCGAAGAGAATGGATGCTTTCATGCAGAAGTTGATTGATGACCGTAGATGCATATT GGAAGATAAAAACACAATGATTGATCACCTATTGTCCTTACAACAGTCACAGCCAGAGTATTACTCTGACCAAATTATTAAAGGGATTATTCAGATAATG CTACTAGCTGGAACGGATACATCAGCGGTGACAATAGAATGGGCAATGTCAAACTTACTCAACCATCCAGAAAAGCTCAAGAAAGCAAGAGATGAGATCG ACAGTAAAGTCGGGGAAGAGAGAGCGGTGGAGGAATCAGACCTCTCCAAGTTGAAATACATTCAGAACATCATCTCTGAAACTCTGCGATTAAACCCCTC AGCTCCGCTACTAGTCCCCCACCGCTCTTCCAAGGACTTCACCCTCAGCAGCTACCATATCCCCGAAAACACAATGTTGTTGGTCAACGCCTGGGCTATC CATAGGGATCCTCGTGTCTGGGAAGATGCAACCACTTTCAAACCTGAGAGGTTTGAAAATGATGATGATGGTGGTGGTGATCATAATAAGTATAAGCTGC TTCCTTTTGGAGTTGGTAGAAGGGCTTGTCCAGGGACTGGGTTGGCTCACAGAATGGTTGGATTGACTCTAGCAACTTTGATACACTGCTTTGACTGGGA GAAACTTGATGATCAAGAGATTGATATGGCTGAAGGCAGTGGCCTTACGATGCCTAAACTCATTCCTCTTCAGCTCAATTGCAAGCCTCGTCGTCCCATT TTCAACTCTAAATATATCTAA
AA sequence Show only first row Show all	>Lus10011958 pacid=23146524 polypeptide=Lus10011958 locus=Lus10011958.g ID=Lus10011958.BGIv1.0 annot-version=v1.0 MEINYSSYMSISILLLIVAFIFHRSKTNITYRRPPSPPGSLPIIGHLHLLKQPLHRSLHFLSHKHGPIMWLNFGSHPVVVVSSSEAAEECFTKNDITLAN RPNHMVGKHIGYNHTTMVQAPYGDHWRNLRRIGSLEIFSSSRLNNFLAIRADEVKRLMLRLVSSSSSSNNHSKVELRGMLQDLTLNNMLRMIAGKRYYGE SVGDKDEADEFKEMMVEVMGIGSGNPANFIPLLKWVGFGGFERKLIRLSKRMDAFMQKLIDDRRCILEDKNTMIDHLLSLQQSQPEYYSDQIIKGIIQIM LLAGTDTSAVTIEWAMSNLLNHPEKLKKARDEIDSKVGEERAVEESDLSKLKYIQNIISETLRLNPSAPLLVPHRSSKDFTLSSYHIPENTMLLVNAWAI HRDPRVWEDATTFKPERFENDDDGGGDHNKYKLLPFGVGRRACPGTGLAHRMVGLTLATLIHCFDWEKLDDQEIDMAEGSGLTMPKLIPLQLNCKPRRPI FNSKYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10011958 [exp]	0	1
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10039745 [exp]	3.0	0.9533
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039505 [exp]	3.5	0.9361
AT5G51950			Glucose-methanol-choline (GMC)...		Lus10015012 [exp]	8.4	0.9268
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Lus10001856 [exp]	8.9	0.9189
AT5G65380			MATE efflux family protein (.1...		Lus10002645 [exp]	10.8	0.9305
AT5G64250			Aldolase-type TIM barrel famil...		Lus10003271 [exp]	13.6	0.9379
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10025923 [exp]	16.2	0.9021
AT5G45020			Glutathione S-transferase fami...		Lus10026012 [exp]	17.2	0.9278
AT1G47530			MATE efflux family protein (.1...		Lus10042130 [exp]	19.8	0.9196
AT5G66740			Protein of unknown function (D...		Lus10014323 [exp]	20.0	0.8478

Compare expression of checked genes

Lus10011958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.