Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19480 280 / 6e-91 NFA2, NFA02, NAP1;2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) AT5G56950 279 / 3e-90 NFA3, NFA03, NAP1;3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) AT4G26110 276 / 2e-89 NAP1;1, ATNAP1;1 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) AT3G13782 184 / 1e-54 NFA4, NFA04, NAP1;4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, nucleosome assembly protein1;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011956 [exp] 373 / 3e-127 AT2G19480 422 / 8e-148 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011957 [exp] 310 / 2e-102 AT2G19480 449 / 2e-158 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10027615 [exp] 255 / 9e-82 AT2G19480 385 / 3e-134 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10037630 [exp] 239 / 5e-75 AT2G19480 386 / 1e-133 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10015612 [exp] 241 / 1e-72 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10011636 [exp] 179 / 6e-54 ND / Lus10001235 [exp] 167 / 6e-48 AT4G26110 250 / 2e-81 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10003721 [exp] 154 / 3e-45 ND / Lus10026197 [exp] 156 / 2e-43 AT4G26110 229 / 7e-73 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067800 [exp] 295 / 1e-96 AT2G19480 462 / 4e-163 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.006G148600 [exp] 293 / 1e-95 AT2G19480 447 / 1e-157 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G021400 [exp] 205 / 8e-62 AT2G19480 286 / 2e-94 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036200 [exp] 197 / 1e-57 AT2G19480 285 / 3e-92 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036500 [exp] 194 / 3e-56 AT2G19480 280 / 5e-90 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040250 [exp] 196 / 4e-55 AT2G19480 280 / 9e-87 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040700 [exp] 179 / 1e-50 AT2G19480 287 / 7e-93 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00956 [flax] [poplar] NAP Nucleosome assembly protein (NAP)
Representative CDS sequence Show only first row Show all	>Lus10011959 pacid=23146538 polypeptide=Lus10011959 locus=Lus10011959.g ID=Lus10011959.BGIv1.0 annot-version=v1.0 ATGAATGTGTTTGACGAGCCCTTCTGGTCGCTTCTCCTGTTACCCCTAGAAAGAGAGATTGTGGAATGGACGCTCCCCAAAAGAAACGCGTTCATGGTTG AGGCCTTGAGGATTACCACACGGCTTAGACAAGGACGAGTGGGCACCCCGATCCGACATCTTGATTGTCATCCATGGTACATGGGCATGAACATCTTCTT CATCTCGCCGCACTACTACGACTCCTTCCCAGCTGAAGCTCTACTCATGTTGGCATTCATGGTAAGGAACAAGACCATATGGGTAGTATTTCACATGACG CAATTAGTAGCTTGTGTCGCCAAATGGGAGGCCAATGCTGAGACTGTCACCCGTTTGGGTAGCTGGCTTAGTACCTTCTTAACCATAAGTTGGATTGTGC AGGATAAGCTGCAAAATTTGGCTGGTCAACACACTGATATGTTGGAGGCTTTAACCCCCAAAGTGCGTCAGCGTGTGGAGAGTCTCAGGGGGATTCAGGC ATGTTGCTCGAGGACAGCCAACATGACGAGCTCTGAACAGAGCCAACATGATGAGCTAGAAGCAAAATTCTTTGAGGAGAGGGCAGCCCTTGAAGCCAAA TATCAAAAGCTGTACCAACCACTCTATACCCAGCGGTATGAAATTGTTAATGGTGTCTCCGAAGTGGAGGTATCCAAAGAAGAAGGGGATAACAAGGATG AGGCTGTCGAAGAGAAAGGTGTTCCTGAGTTTTGGCTGCTTGCAATGAAGAACAATGAAGTCCTAGCAGAGGAGATTACCGAGAAGGATGAGGGAGCTCT AAAGTTCCTGAAAGATATTAAATGGAAGAGAGTTGAGGAGCCCAAAGGATTCAAGCTTGAGACTGAAATTGAATGGTATCCAGGGAAGTGCTTGACTCAA AAGATCCTGAAGAAGAAGCCCAAAAAAGGATCTAAAAATGCTAAACCTATAACCAAAACAGAGGATTGTGAGAGCTTTTTTAACTTCTTCAGTCCTCCAC AAGTCCCCGAGGATGATGAGGAGCTAGATGAAGATACTGCTGAAGAGCTTCAAAATCAGATGGAACAAGACTATGATATTGGGTCTACCATCCGGGACAA GATCATACCACATGCTGTGTCATGGTTTACTGGGGAGGCTGTTGAGGATGACGATGATGGGCTTGAACTGGACGTTACCGAAGATGACGAGGATGATGAA GAGGATGAGGAGGATGAAGAGGAGGAGGATGATGATGAAGAAGAAGAAGAAGAAGGGAAGAAGGTAAGGTTTCCTTTGATATTTCATGGTCAAAAGAGTG GTAGGAGGACACAAGCTTCAGATGTTGAGAAGCAGGGTGAGCGGCCTGCAGAGTGCAAGCAGCAGTAA
AA sequence Show only first row Show all	>Lus10011959 pacid=23146538 polypeptide=Lus10011959 locus=Lus10011959.g ID=Lus10011959.BGIv1.0 annot-version=v1.0 MNVFDEPFWSLLLLPLEREIVEWTLPKRNAFMVEALRITTRLRQGRVGTPIRHLDCHPWYMGMNIFFISPHYYDSFPAEALLMLAFMVRNKTIWVVFHMT QLVACVAKWEANAETVTRLGSWLSTFLTISWIVQDKLQNLAGQHTDMLEALTPKVRQRVESLRGIQACCSRTANMTSSEQSQHDELEAKFFEERAALEAK YQKLYQPLYTQRYEIVNGVSEVEVSKEEGDNKDEAVEEKGVPEFWLLAMKNNEVLAEEITEKDEGALKFLKDIKWKRVEEPKGFKLETEIEWYPGKCLTQ KILKKKPKKGSKNAKPITKTEDCESFFNFFSPPQVPEDDEELDEDTAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAVEDDDDGLELDVTEDDEDDE EDEEDEEEEDDDEEEEEEGKKVRFPLIFHGQKSGRRTQASDVEKQGERPAECKQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10011959 [exp]	0	1
AT3G09500			Ribosomal L29 family protein ...		Lus10030314 [exp]	2.6	0.7072
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	3.9	0.7658
AT5G24510			60S acidic ribosomal protein f...		Lus10008944 [exp]	3.9	0.7871
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10004648 [exp]	7.3	0.7779
AT4G25740			RNA binding Plectin/S10 domain...		Lus10014966 [exp]	10.0	0.6986
AT1G54380			spliceosome protein-related (....		Lus10022813 [exp]	12.3	0.7046
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10012155 [exp]	13.8	0.7178
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10026925 [exp]	14.1	0.6831
AT1G48320			Thioesterase superfamily prote...		Lus10043043 [exp]	16.4	0.7011
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10017690 [exp]	18.0	0.7083

Compare expression of checked genes

Lus10011959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.