Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06925 202 / 1e-67 ATSPLA2-ALPHA, PLA2-ALPHA PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) AT2G19690 72 / 1e-16 PLA2-BETA phospholipase A2-beta (.1.2) AT4G29460 71 / 2e-15 PLA2-GAMMA phospholipase A2 gamma, Phospholipase A2 family protein (.1) AT4G29470 70 / 4e-15 PLA2-DELTA phospholipase A2 delta, Phospholipase A2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028189 [exp] 68 / 9e-15 AT2G19690 149 / 4e-47 phospholipase A2-beta (.1.2) Lus10042892 [exp] 67 / 1e-14 AT4G29460 147 / 2e-45 phospholipase A2 gamma, Phospholipase A2 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132100 [exp] 209 / 5e-70 AT2G06925 228 / 9e-78 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Potri.006G070400 [exp] 194 / 4e-64 AT2G06925 216 / 4e-73 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Potri.012G049101 [exp] 144 / 4e-45 AT2G06925 157 / 4e-51 PHOSPHOLIPASE A2-ALPHA, Phospholipase A2 family protein (.1) Potri.006G149700 [exp] 74 / 2e-17 AT2G19690 153 / 2e-48 phospholipase A2-beta (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011960 pacid=23146534 polypeptide=Lus10011960 locus=Lus10011960.g ID=Lus10011960.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTTCTGGAATACCAAGACATCATCAATACCACTTGTCAATTCATCATCTCGTTTTATTACTACTACTACTAGTGTCGTTATGCCTCACTG CCGTAGACGGTCTCAATCTCGGCGTCCAGGCCACCGATCAACCCGGGGTCACTCTGAGCAAAGAATGCAGCAGGAAATGCGAGTCGGCGTTCTGCGCGGT GCCGCCGCTACTAAGGTACGGGAAGTACTGTGGGTTGCTGTACAGTGGATGCCCAGGAGAAACTCCATGCGACGGGCTGGATTCTTGTTGCATGAACCAT GATCTCTGTGTCCAATCCAAGAACAATGACTATCTGAGTAAGGAATGCAGCGAGAAATTGGTGAACTGCATGAAGAACTTCATAAAGTCAGGAGGACATA GCTTCAAAGGCAGCACTTGCGATGCCACTGATGTCATTGATGTTATCTCTCTTGTTATGGATGCTGCTCTTCTTGCTGGTAGATACCTCCACAGGCCTTA G
AA sequence Show only first row Show all	>Lus10011960 pacid=23146534 polypeptide=Lus10011960 locus=Lus10011960.g ID=Lus10011960.BGIv1.0 annot-version=v1.0 MAASSGIPRHHQYHLSIHHLVLLLLLLVSLCLTAVDGLNLGVQATDQPGVTLSKECSRKCESAFCAVPPLLRYGKYCGLLYSGCPGETPCDGLDSCCMNH DLCVQSKNNDYLSKECSEKLVNCMKNFIKSGGHSFKGSTCDATDVIDVISLVMDAALLAGRYLHRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Lus10011960 [exp]	0	1
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10029950 [exp]	1.4	0.8524
					Lus10027544 [exp]	4.6	0.8114
AT5G09760			Plant invertase/pectin methyle...		Lus10013720 [exp]	5.3	0.8287
AT5G09760			Plant invertase/pectin methyle...		Lus10005587 [exp]	5.5	0.8275
AT1G65900			unknown protein		Lus10020799 [exp]	6.6	0.8385
AT3G07750			3'-5'-exoribonuclease family p...		Lus10001747 [exp]	7.7	0.7642
AT3G61490			Pectin lyase-like superfamily ...		Lus10007922 [exp]	8.4	0.7936
AT3G53140			O-methyltransferase family pro...		Lus10014400 [exp]	8.9	0.7635
AT4G39900			unknown protein		Lus10041703 [exp]	9.8	0.8040
AT5G09995			unknown protein		Lus10035858 [exp]	10.2	0.7863

Compare expression of checked genes

Lus10011960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.