Plant FIBer expression Database

Lus10011961 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20600 310 / 6e-99 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027609
[exp]
523 / 0 AT5G20600 452 / 6e-154 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G036500
[exp]
477 / 3e-163 AT5G20600 455 / 2e-155 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05997 Nop52 Nucleolar protein,Nop52
Representative CDS sequence
>Lus10011961 pacid=23146510 polypeptide=Lus10011961 locus=Lus10011961.g ID=Lus10011961.BGIv1.0 annot-version=v1.0
ATGGTCGAAGCTCAACTTCAAGTCGGACCGTCGCTGATTAAGCAGCTCGGTGCCTCCGACAACAAGACCCGCAGCAGATCCCTCCGCGCCGTTCTTTCCA
CATGGCTTCCTTCCCAATCCACTCTCTCCGACGACGATATGAAGAAGCTCTGGAAGGGACTCTTCTACTGCTTCTGGCACTCCGACAAGCTCCCCGCCCA
AACACACCTCATCGACCGCCTCAGCTCCTTGCTTCCGGTCCTCGATTTGCCTCTATCGGCTCACTACTTCTCCGTCTTCCTCCTCACAATGCGCCGCGAG
TGGCCTGGAATCGATTTCCTCAGGTTGGACAAGTTCTACCTCTTGATTCGTAGGTTTTTCCGCTCGCTTTTCCTTTTGTTGAAGAAGAACTCGTGGAATT
TGGAGCTCTCCAATCAGTTCATGGGCATTTTGTTGGAGAGGGCTTTCTTGGCTGATGATAAGTTCCAAGGGAATGGTGTTAACTATCATATTGCCTCTGT
TTTCCTTGAGGAGCTCAAACCTTTTCTCCCCCTGAGTAAGCAGGTTGTCCAGGCTCTTGTGTTGCCTATGGTGTCTGTGATGGGGAAGGCAGTTGATAAG
GTGCTGCTTGGTAAACTTAAGGGCAATGTTTTCGACGAGTTGTTGAAAACTGGAAGGGCATTGCTGGAGTTGAAGAAATTAGGGCTAGATGGTGATTCTG
AGAATAACAATGTAGTGTTTCTGGGTACAATTGCCCTAGCTATGGGATTTTCAGCTATATTCTATGAAATTGGTTCCTCTGCCGATTGTCCTCAAGGTAA
CAGGAAAGTTCTCCTTGGTCTACACGAGGAGTTTTTGCAGCTGGAGAAGGCATTGGCTCTTTCAGGAATCGAAGTTTCCCTTCCCGAAGTTAATAATGGG
AGTACTAATGATGATGATGATGATGAAGTGCCTACTTTAGTGCCAATCATGGATGTGGAAGGTCGAAATGGTGATGCTGGCTATGGCACTGGTGAAAAGA
AATCTAAGAAGAACAAAAAGAGGAAGAAAGATTCATCTGACAACGATGGAAAAGATAAGGAGGAAAAGAAGAACAAGAAGGAGGAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGCAGGAAAATGGTGGAATGGATGGGGAGAATGCAAATGGTGTAATTGAAAACGGTGAGAACTCAAGCAAGGAAAAGGGAAGTGAT
GTGATGGCATTCGATGATGCTGTTATAGCAAACCTCCAAATGCAGTTTGAGAAAGTTGCAGCTGAAGTTGGTATGGATAACAGAGCTGGAAGCCCTCTCG
AGCTCGGTGAAGTGGAAGGCAATGGTCATTTACCCAAGAAGAGGAAGAGATCCAAAAGTAAGAAAGCTGTGAAGCAGCAGCAGTCTGAGAATCACGAATC
AACAAATCAGGGGGAACAGAATGCTGCTGAAACTGGAAAGAGTGGGGATAAAAGTGCTGCAAAGAAGGTTCGGTTTGCAATGAAGAACAACTTGGTATGG
AAGCCACACAATCCTCTACCTCCAGAGAGTCTGAGAATACCACCTTCAGTTACCCCTAGAGGGAGTGCTCTAAAGAAAGGATTATCTCCAGGTCCAATCA
GGGAGATCCGTAGTTCGGGGGGAGCTAACAAGGCTAGAAAAAGAGCAAAGTCCCTGAAAGGGAGAAGAGGAGTTGTCCCTCCTACTATAAGACGCATGAA
GAAGTCCAACTCTCTCTGA
AA sequence
>Lus10011961 pacid=23146510 polypeptide=Lus10011961 locus=Lus10011961.g ID=Lus10011961.BGIv1.0 annot-version=v1.0
MVEAQLQVGPSLIKQLGASDNKTRSRSLRAVLSTWLPSQSTLSDDDMKKLWKGLFYCFWHSDKLPAQTHLIDRLSSLLPVLDLPLSAHYFSVFLLTMRRE
WPGIDFLRLDKFYLLIRRFFRSLFLLLKKNSWNLELSNQFMGILLERAFLADDKFQGNGVNYHIASVFLEELKPFLPLSKQVVQALVLPMVSVMGKAVDK
VLLGKLKGNVFDELLKTGRALLELKKLGLDGDSENNNVVFLGTIALAMGFSAIFYEIGSSADCPQGNRKVLLGLHEEFLQLEKALALSGIEVSLPEVNNG
STNDDDDDEVPTLVPIMDVEGRNGDAGYGTGEKKSKKNKKRKKDSSDNDGKDKEEKKNKKEEKKKKKKKKKKQENGGMDGENANGVIENGENSSKEKGSD
VMAFDDAVIANLQMQFEKVAAEVGMDNRAGSPLELGEVEGNGHLPKKRKRSKSKKAVKQQQSENHESTNQGEQNAAETGKSGDKSAAKKVRFAMKNNLVW
KPHNPLPPESLRIPPSVTPRGSALKKGLSPGPIREIRSSGGANKARKRAKSLKGRRGVVPPTIRRMKKSNSL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G20600 unknown protein Lus10011961
[exp]
0 1
AT5G49560 Putative methyltransferase fam... Lus10026017
[exp]
6.2 0.8654
AT5G14050 Transducin/WD40 repeat-like su... Lus10038375
[exp]
7.1 0.9105
AT5G14050 Transducin/WD40 repeat-like su... Lus10036236
[exp]
7.7 0.9023
AT2G44020 Mitochondrial transcription te... Lus10004614
[exp]
8.9 0.8651
AT4G15770 RNA binding (.1) Lus10037509
[exp]
9.9 0.9044
AT4G26190 Haloacid dehalogenase-like hyd... Lus10017858
[exp]
10.3 0.8592
AT3G49240 EMB1796 embryo defective 1796, Pentatr... Lus10018109
[exp]
10.4 0.8998
AT1G17880 ATBTF3 basic transcription factor 3 (... Lus10015123
[exp]
13.5 0.9069
AT3G51010 unknown protein Lus10042347
[exp]
13.6 0.9020
AT1G07210 Ribosomal protein S18 (.1) Lus10038756
[exp]
15.9 0.8499

Lus10011961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.