Plant FIBer expression Database

Lus10011963 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G35320 54 / 8e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027608
[exp]
352 / 5e-125 AT5G35320 67 / 2e-13 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G132600
[exp]
72 / 7e-15 AT5G35320 77 / 2e-16 unknown protein
Potri.006G070900
[exp]
67 / 2e-13 AT5G35320 89 / 3e-21 unknown protein
PFAM info
Representative CDS sequence
>Lus10011963 pacid=23146547 polypeptide=Lus10011963 locus=Lus10011963.g ID=Lus10011963.BGIv1.0 annot-version=v1.0
ATGGCAAGGGAAGGTAGATTCAAGCGGAAGGATCTCGATATGGATTTCGTCTCCGATGATTTCTCCCTCTCTCCTGCTCTGAAGATTCGCCGCTTGGTAA
TGGACACTGAGTCTTTGCTTCCGACGATGGATGAAGAGGATGGGAAAGCTGCTCCTGTGCCTGTAGTGGAGATGGACGAATCAGTTCCGTCGCCGCAGTC
TGAGAACCTGGAGAGGGCTTTGGTGTTGTTCAGGCCGATCAACATTCGTACTCAATCCAATTACTCCGTGGCTCTAGATTCCCAACTTCTCTCCAGTCTT
CAAAGAGACCAAGTCCTCAGTGGTGGCCAGCCATTTGAGATGATCCAGTCGGCCGAGAATAAGATTAGCGATGGTGATGAACGCGATGGATGCAAGGCTG
TTGTACCATGGGTTTCTCGGCAAGGTTTCCAGACGGAAGAATCACAGGACACGATGGAACAAGATGAAGGAGGTGTAGTATCAATGGATGTTGAGGACAG
CGAAGGTAATGGGAATACGGAGCAAATGTGGCAGTTCTACAAGATGAGTGTGCCTCAATTGCAGCAGCACTGCTTGATTCCCGAGCTCCCTCGGAGTAAC
CCGACTCCAGTGATCTGGTTGAGATAA
AA sequence
>Lus10011963 pacid=23146547 polypeptide=Lus10011963 locus=Lus10011963.g ID=Lus10011963.BGIv1.0 annot-version=v1.0
MAREGRFKRKDLDMDFVSDDFSLSPALKIRRLVMDTESLLPTMDEEDGKAAPVPVVEMDESVPSPQSENLERALVLFRPINIRTQSNYSVALDSQLLSSL
QRDQVLSGGQPFEMIQSAENKISDGDERDGCKAVVPWVSRQGFQTEESQDTMEQDEGGVVSMDVEDSEGNGNTEQMWQFYKMSVPQLQQHCLIPELPRSN
PTPVIWLR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G35320 unknown protein Lus10011963
[exp]
0 1
AT2G47180 ATGOLS1 galactinol synthase 1 (.1) Lus10010897
[exp]
1.0 0.9627
AT1G53540 HSP20-like chaperones superfam... Lus10040830
[exp]
1.4 0.9414
AT4G21320 HSA32 HEAT-STRESS-ASSOCIATED 32, Ald... Lus10018387
[exp]
6.6 0.9297
AT5G02500 AtHsp70-1, AT-H... HEAT SHOCK PROTEIN 70-1, ARABI... Lus10005953
[exp]
6.7 0.9286
AT5G02500 AtHsp70-1, AT-H... HEAT SHOCK PROTEIN 70-1, ARABI... Lus10029455
[exp]
7.9 0.9373
AT1G30070 SGS domain-containing protein ... Lus10038500
[exp]
9.5 0.9253
AT5G37670 HSP15.7CI HSP20-like chaperones superfam... Lus10020815
[exp]
9.9 0.9125
AT5G49910 CPHSC70-2EATSHO... HEAT SHOCK PROTEIN 70-7, chlor... Lus10035781
[exp]
10.2 0.9238
AT1G07400 HSP20-like chaperones superfam... Lus10040722
[exp]
11.0 0.9168
AT3G09350 Fes1A Fes1A (.1.2.3) Lus10023786
[exp]
12.7 0.9078

Lus10011963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.