Plant FIBer expression Database

Lus10011966 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G55140 160 / 1e-52 ribosomal protein L30 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004595
[exp]
213 / 2e-73 AT5G55140 161 / 6e-53 ribosomal protein L30 family protein (.1)
Lus10031912
[exp]
209 / 7e-72 AT5G55140 161 / 7e-53 ribosomal protein L30 family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G225600
[exp]
175 / 2e-58 AT5G55140 154 / 4e-50 ribosomal protein L30 family protein (.1)
Potri.014G157400
[exp]
170 / 2e-56 AT5G55140 151 / 5e-49 ribosomal protein L30 family protein (.1)
Potri.010G076275
[exp]
79 / 2e-20 AT5G55140 68 / 2e-16 ribosomal protein L30 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Representative CDS sequence
>Lus10011966 pacid=23161492 polypeptide=Lus10011966 locus=Lus10011966.g ID=Lus10011966.BGIv1.0 annot-version=v1.0
ATGAACGGTTTCAAGGCTTTCAAAGCGCAAGTGCCAATAGCTTGGAGTCCTCGTCTATACATAACTCTTGTCAGAGGGATTCCCGGAACCAGGAGACTCC
ATAGGCGCACCCTCGAGGCATTGTGTCTCACCAAGTGCAACCGGACAGTGACCCGAGAAAATTGTTCTTCCATTAGAGGAATGCTTCAACAGGTGAAGAG
ATTAGTCGTGATCGAGACGGAAGAGATGTACAATGCTCGCAAGGAGAACTACGCAAAGCACAAGGCCGTTCGTCCTCCAGTCGTTATAGGCCACTCTCCA
AATGCTGCGAGCAGCTCTGCGTAG
AA sequence
>Lus10011966 pacid=23161492 polypeptide=Lus10011966 locus=Lus10011966.g ID=Lus10011966.BGIv1.0 annot-version=v1.0
MNGFKAFKAQVPIAWSPRLYITLVRGIPGTRRLHRRTLEALCLTKCNRTVTRENCSSIRGMLQQVKRLVVIETEEMYNARKENYAKHKAVRPPVVIGHSP
NAASSSA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G55140 ribosomal protein L30 family p... Lus10011966
[exp]
0 1
AT4G39900 unknown protein Lus10041703
[exp]
6.7 0.8329
AT1G19990 unknown protein Lus10033141
[exp]
7.5 0.8809
AT1G76860 Small nuclear ribonucleoprotei... Lus10040487
[exp]
7.7 0.8555
AT3G07590 Small nuclear ribonucleoprotei... Lus10003727
[exp]
8.6 0.8640
AT1G20580 Small nuclear ribonucleoprotei... Lus10016013
[exp]
15.2 0.8443
AT2G21060 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, g... Lus10034487
[exp]
16.0 0.8500
AT1G71120 GLIP6 GDSL-motif lipase/hydrolase 6 ... Lus10034635
[exp]
19.0 0.7473
AT1G72210 bHLH bHLH096 basic helix-loop-helix (bHLH) ... Lus10015902
[exp]
22.3 0.8432
AT1G76860 Small nuclear ribonucleoprotei... Lus10011293
[exp]
23.4 0.8155
AT1G32580 plastid developmental protein ... Lus10023744
[exp]
24.3 0.8353

Lus10011966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.