Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18130 1387 / 0 PHYE phytochrome E (.1) AT2G18790 1321 / 0 OOP1, HY3, PHYB OUT OF PHASE 1, phytochrome B (.1) AT4G16250 1279 / 0 PHYD phytochrome D (.1) AT1G09570 1038 / 0 FHY2, HY8, FRE1, PHYA ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) AT5G35840 1020 / 0 PHYC phytochrome C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037771 [exp] 1357 / 0 AT2G18790 1848 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10016911 [exp] 1352 / 0 AT2G18790 1836 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10006389 [exp] 1040 / 0 AT5G35840 1426 / 0.0 phytochrome C (.1) Lus10007594 [exp] 1033 / 0 AT1G09570 1852 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10012151 [exp] 1029 / 0 AT1G09570 1855 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10012342 [exp] 974 / 0 AT5G35840 1363 / 0.0 phytochrome C (.1) Lus10004593 [exp] 667 / 0 AT4G18130 462 / 2e-153 phytochrome E (.1) Lus10004592 [exp] 606 / 0 AT4G18130 321 / 1e-100 phytochrome E (.1) Lus10006388 [exp] 315 / 8e-97 AT5G35840 493 / 8e-165 phytochrome C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105200 [exp] 1382 / 0 AT2G18790 1840 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.010G145900 [exp] 1369 / 0 AT2G18790 1820 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.013G000300 [exp] 1041 / 0 AT1G09570 1806 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0183 [flax] [poplar] PAS_Fold PF08446 [flax] [poplar] PAS_2 PAS fold CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold CL0161 [flax] [poplar] GAF PF00360 [flax] [poplar] PHY Phytochrome region
Representative CDS sequence Show only first row Show all	>Lus10011967 pacid=23161450 polypeptide=Lus10011967 locus=Lus10011967.g ID=Lus10011967.BGIv1.0 annot-version=v1.0 ATGGAAAGAGGAGTACCAACAACCACCGCCGCCGCCGCCGCAGTGTCGTCGTCGTCGGCGGCGAGCAACATGAGGACGATCAACGACAACACGAAAGGTA AAGCCACCATTGCGCAATTCAACGCCGACGCAGGGCTGTTAGCGGAGTTCGAGTCGAACAAGTCCTTTAACTACTCAAGATCGTTTCTTTCCCCGCCGGC GGAGCCAGTGCCGGAGGAGCAGGTCGCCATTTACCTCTCCAGAATCCAGCGCGGCGGATTCATCCAGCCCTTTGGGTGTCTGCTCGCATTTGAAGAGATG AGCTTTAAGGTTATCGGATACAGCGAGAATTGCTTCGAATTGTTAGGGTTAGGTTACAATAGGGAAATTGGATTGATCGGCATTGATGCTAGATCCCTTT TCACGCCTTCCTCCGGTGCATCATTGGCAAGAGCAGCTTCCGCTAGTGAGCTTTCATTTCTGAATCCTGTTTGGGTATACTCCAGGGTTATGAACAAACC CTTCTATGCAATACTCCACAGGGTGGATGTTGGGATTGTAATTGATTTGGAGCCAGCTAGGTCAAGCGACCCGGCCCTGTCTCGAGCTGGAGCGGTCCAG TCACAGAAGCTTGCGGTGCAAGCGATCTCGAGGCTGCAGTCCTTACCCGGCGGGGACATAGGTGTCTTGTGTGACACGGTAGTGGAAGATGTTCATCGTC TTACTGGTTACGATAGGGTTATGGTGTACAAGTTCCACGAGGATGAACACGGTGAGGTGGTCTCCGAGGTTCGGAGTAAGTCCGATTTGGAGCCTTACTT AGGACTACATTACCCGGCCACCGATATCCCTCAAGCCGCTCGGTTTTTGTTCAAGCAGAATCGAGTTAGGATGATCTGTGATTGTAATGCTAATCAGGTT CGGGTGGTTCAGAGTGAAGAATTGATGCAGCCTTTGTTATTGGTCAACTCCACGCTTCGGTCTCCTCACGGGTGCCACACGCAGTACATGGCGAATATGG GTTCGATCGCTTCGTTGGTGCTTTCGGTTACGATAAATGGAAATGATTCGACGAAACTTTGGGGGCTGGTCGTGTGCCACCATTCGACTCCACGGTATGT CCCTTTCCCGCAGCGATACGCTTGCGAGTTTCTGATGCAGGCGTTCGGGTTGCAGCTCTACATGGAGCTGCAACTTGCCGCGCAGTTTCTCGAGAAGAAG GTTCTCAAGACGCAGACTTTATTATGCGATATGCTCCTCCGCGATGCTCCCTTCGGAGTAGTGACTCAGTCTCCCAGCATTATGGATTTGGTTAGGTGCG ATGGCGCTGCATTGTACTACGGTGGGAAGGCGTGGCTGCTCGGTGTGACTCCTACCGAATCGGAAGTTAAAGATCTTGTGCAATGGTTGATTGAGAATCA CGGTGATTCGACTGGTTTGACTACCGATAGTTTGGCAGACGCTGGATACCCTGGCGCGGAGTTTCTAGGCAATGCGGTGTGTGGAATGGCGATTGCGAGG ATTACCTCGCGAGATTTCTTGTTCTGGTTTCGATCTCATACCGCGAAGGAAGTGAAATGGGGCGGGGCGAAGCATCATCCGGAAGATAAGGACGATGATG GGAAGATGCATCCGAGATCGTCGTTTAAAGCGTTTCTCGAGGTGGTGAAGCGGAAAAGCTTGCCATGGGAGGTTTCCGAGATCAACGCGATCCACTCGTT GCAATTGATAATGCGACATTCGTTCGAGGAAATGGAGGATATTGGAGCAAAGGCGATGGTGGTGGATACGGAAATGAATGATGATATCGCAGAATTGAGT TCGGTTGCGACCGAAATGGCGAGGCTGATCGAGACAGCAACAGCGCCGATTTTCGGAGTTGATCTGGATGGGTTTGTGAACGGATGGAACGCGAAAGTTG CTGACTTGACAGGATTGCCAACCGGTGAAGCGATGGGGAAGTCGTTTGTGAACGAAATCGTTCACGAAGGATCGAGGGGCGAAGTCGAGAGTCTTTTGAC CAAAGCCTTGCAAGGAGAGGAAGAGAAGAATTTCGAGTTGAAGCTGAGGAGATTCGGCATAGACCACAATGAAAATTTGCCAGTGTTCGTTGTGGTTAAT GCTTGCACGAGTAGGAACTACACAAACAGCATCGTAGGGGTCTGTTTCGTCGGTCAGGATGTTACGCCCGAAAAAATCGTCATGGAGAAGTTCATACGTC TTCAAGGGGATTACAAGGCCATAGTGCAAAGCTTGAATCCTCTGATTCCGCCTATTTTCGCATCAGACGAGAATGCCTGTTGTTCGGAATGGAATTCGGC CATGGAAAAGCTGACAGGCTGGACGAGGCAGGAAGTGATGGGTAAGCTGCTCCCTGGCGAGATTTTCGGAAGTCTCTGCCAGGTCAGAGGTCAGGATTCC CTGACCAAGTTCATGATACAGCTGTACAAGGGAATCAGCGGTCGGGACACGGAGAAGATTCACCTCGGAATATTCGATAGGAATGGGGAATCTGTCGACG TGTTCGTAACAGCCAACAGAAGGAGCGATTCGCAAGGAAACATTATCGGTTGTTTCTGCTTCTTGCAGACGATTGATCCTGAGGCTAAACATCATCCGAT TGAAGTTGTTCATAATGGACAGGAAGAGACAAGAAATTCTCAGAAGTTGAAGGAGTTGGCTTACTTACGGCAGGAGATGATCAATCCACTGAGCGGGATT CGATTCACTCACATGCTCCTCGAAAGTACAGCGATTTCCGAGAATCAGAAGCAGTTCCTCGAAACCAGTAATGCTTGCGGAAGGCAGATCATGGCCATAA TTGAAGATGCAGAGCTGGGAAGAATAGAAGAAGGAGGTGTGGAGCTGAGCATGGAAGAGTTTCTCCTGGGAAATGTTTTGGATGCCATAGTAAGCCAAGT GATGACCTTGGTAATGGAAAAGAAGATACAGTTGCTTCATGAAGTTCCTGTGGAAACCAACACACTTTCTCTCTATGGTGATCAAATAAGGCTTCAGCTG GTACTATCAGATTTCTTACTCAGCATTGTTCGTCATACTCCTCCGAATGAATGGGTCGAGATCAAGATTTCACCCGGTCTGAAGCTGATACAGGATGGCA ACGACTTCATTCGGCTACAGTTCAGGATGACTCACCCTGGTGAAGGTTTGCCTGCTGGACTCGTCGAGCACATGGTCGATAACGAGAAACGATGGACTAC GCAGGAAGGTCTTGCGCTTAGCTTGTCGAGGAAGTTACTGAATCGGATGAACGGTCGAGTTCGATATAATCGAGAGCAGAATAGATGTTACTTCCTCATT GATCTTGAATTCAGAACTAAGAAAGGGAGGCAAATGGGGATGCCTCCTGATAATAGCAGATTGATGTAA
AA sequence Show only first row Show all	>Lus10011967 pacid=23161450 polypeptide=Lus10011967 locus=Lus10011967.g ID=Lus10011967.BGIv1.0 annot-version=v1.0 MERGVPTTTAAAAAVSSSSAASNMRTINDNTKGKATIAQFNADAGLLAEFESNKSFNYSRSFLSPPAEPVPEEQVAIYLSRIQRGGFIQPFGCLLAFEEM SFKVIGYSENCFELLGLGYNREIGLIGIDARSLFTPSSGASLARAASASELSFLNPVWVYSRVMNKPFYAILHRVDVGIVIDLEPARSSDPALSRAGAVQ SQKLAVQAISRLQSLPGGDIGVLCDTVVEDVHRLTGYDRVMVYKFHEDEHGEVVSEVRSKSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNANQV RVVQSEELMQPLLLVNSTLRSPHGCHTQYMANMGSIASLVLSVTINGNDSTKLWGLVVCHHSTPRYVPFPQRYACEFLMQAFGLQLYMELQLAAQFLEKK VLKTQTLLCDMLLRDAPFGVVTQSPSIMDLVRCDGAALYYGGKAWLLGVTPTESEVKDLVQWLIENHGDSTGLTTDSLADAGYPGAEFLGNAVCGMAIAR ITSRDFLFWFRSHTAKEVKWGGAKHHPEDKDDDGKMHPRSSFKAFLEVVKRKSLPWEVSEINAIHSLQLIMRHSFEEMEDIGAKAMVVDTEMNDDIAELS SVATEMARLIETATAPIFGVDLDGFVNGWNAKVADLTGLPTGEAMGKSFVNEIVHEGSRGEVESLLTKALQGEEEKNFELKLRRFGIDHNENLPVFVVVN ACTSRNYTNSIVGVCFVGQDVTPEKIVMEKFIRLQGDYKAIVQSLNPLIPPIFASDENACCSEWNSAMEKLTGWTRQEVMGKLLPGEIFGSLCQVRGQDS LTKFMIQLYKGISGRDTEKIHLGIFDRNGESVDVFVTANRRSDSQGNIIGCFCFLQTIDPEAKHHPIEVVHNGQEETRNSQKLKELAYLRQEMINPLSGI RFTHMLLESTAISENQKQFLETSNACGRQIMAIIEDAELGRIEEGGVELSMEEFLLGNVLDAIVSQVMTLVMEKKIQLLHEVPVETNTLSLYGDQIRLQL VLSDFLLSIVRHTPPNEWVEIKISPGLKLIQDGNDFIRLQFRMTHPGEGLPAGLVEHMVDNEKRWTTQEGLALSLSRKLLNRMNGRVRYNREQNRCYFLI DLEFRTKKGRQMGMPPDNSRLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18130		PHYE	phytochrome E (.1)		Lus10011967 [exp]	0	1
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	1.0	0.9362
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10023009 [exp]	1.4	0.9241
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Lus10023553 [exp]	1.7	0.8922
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10027400 [exp]	3.9	0.8843
AT1G69450			Early-responsive to dehydratio...		Lus10030431 [exp]	4.9	0.8872
AT1G04500			CCT motif family protein (.1)		Lus10023727 [exp]	6.5	0.8399
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10042652 [exp]	6.9	0.8482
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	6.9	0.8818
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10001396 [exp]	7.0	0.8722
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10017267 [exp]	7.5	0.8448

Compare expression of checked genes

Lus10011967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.