Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29400 817 / 0 AML5 MEI2-like protein 5 (.1.2) AT4G18120 635 / 0 AML3 MEI2-like 3 (.1.2) AT2G42890 595 / 0 AML2, MEI2 MEI2-like 2 (.1.2.3) AT5G07290 269 / 2e-77 AML4 MEI2-like 4 (.1) AT5G61960 264 / 1e-75 AML1 MEI2-like protein 1 (.1.2) AT3G26120 135 / 7e-33 TEL1 terminal EAR1-like 1 (.1) AT1G67770 117 / 2e-27 TEL2 terminal EAR1-like 2 (.1) AT5G07930 83 / 3e-17 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3) AT1G37140 76 / 6e-15 MCT1 MEI2 C-terminal RRM only like 1 (.1.2) AT5G54900 69 / 7e-12 ATRBP45A RNA-binding protein 45A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004591 [exp] 1504 / 0 AT1G29400 908 / 0.0 MEI2-like protein 5 (.1.2) Lus10020769 [exp] 922 / 0 AT1G29400 786 / 0.0 MEI2-like protein 5 (.1.2) Lus10007346 [exp] 914 / 0 AT1G29400 779 / 0.0 MEI2-like protein 5 (.1.2) Lus10032537 [exp] 297 / 5e-87 AT5G61960 664 / 0.0 MEI2-like protein 1 (.1.2) Lus10043204 [exp] 295 / 3e-86 AT5G61960 728 / 0.0 MEI2-like protein 1 (.1.2) Lus10036953 [exp] 127 / 3e-30 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10006234 [exp] 127 / 3e-30 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10002047 [exp] 96 / 7e-22 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1) Lus10002046 [exp] 100 / 1e-21 AT3G26120 298 / 4e-94 terminal EAR1-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059800 [exp] 957 / 0 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2) Potri.005G202000 [exp] 934 / 0 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.003G162700 [exp] 344 / 3e-104 AT5G07290 645 / 0.0 MEI2-like 4 (.1) Potri.015G106000 [exp] 333 / 3e-100 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.001G067300 [exp] 333 / 4e-100 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.012G107900 [exp] 294 / 2e-90 AT1G29400 288 / 2e-88 MEI2-like protein 5 (.1.2) Potri.012G107100 [exp] 298 / 1e-87 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.010G051100 [exp] 134 / 2e-32 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.008G183000 [exp] 133 / 4e-32 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.013G084400 [exp] 101 / 7e-23 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF04059 [flax] [poplar] RRM_2 RNA recognition motif 2 CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10011968 pacid=23161462 polypeptide=Lus10011968 locus=Lus10011968.g ID=Lus10011968.BGIv1.0 annot-version=v1.0 ATGATTCAGCCTCTGAATATATCCAAACCTGCGAGGAACGGTGGATTAGGGATTTTATCCGCATCAAGCGATGCTACTCTCTTCTCCAGCTCGTTACCGG TTTTACCTCATGAAAAGTTGATCTTGGAAGAGAGAGATCATGGCGATCAGGCAGCTGGCAATGCCTCTGCTATTGTGGAGAAACTTCACCCGAATATTGA AAGTACTGATTTACTTCAAAATGGCAATGCTCATGCCACGGGTGCACTGCTTCCTGATAACGAGGATGAGCTCTTAGCTGGGATAATGGATGATTTTGAC TTGAGTAGGTTACCACTCTCGCTGGAAGACCTAGATGATAATGATCTTTTTGGCAGTGGAGGAGGTCTGGAACTTGAAACTGACCTGCAGGAGAACCTGA GCTTCGGTATCTCTAAACTTAACTTGTCTGATGCTGGAAACGGGATGCCTCAGTACGGTCTTCCTACCGGTGTAGGAACAGTTGCAGGTGAACATCCATA TGGCGAGCATCCTTCAAGAACGTTATTTGTCCGAAACATAAACAGTAATGTTGAAGATTCTGAACTCAAGGCTCTGTTTGAGCAATATGGTGATGTTAGG ACTCTATACACTGCTTGCAAACATCGGGGTTTTGTGATGATATCTTACTATGATATCCGTGCTGCCCGAACTGCAATGCGTGCGTTGCAAAACAAGCCTC TTAGACGGAGAAAACTTGATATACACTTTTCAATTCCTAAGGATAATCCATCTGACAAGGACATGAATCAAGGAACTCTGGTTGTTTTTAATTTGGATCC ATCTGTTTCAAATGAAGACCTCCGTCAGATATTTGGTGCCTATGGCGAGGTTAAAGAGATAAGGGAAACACCACACAAGCGGCACCACAAGTTCATTGAA TTCTATGATGTGAGGGCTGCAGAAGCGGCGCTTAAACAATTAAATCGCAGTGACATAGCCGGGAAACGCATAAAGCTTGAACCAAGTCGCCCTGGTGGTG CTCGTCGGAATTTGATGTTACAACTAAATCAAGAGCTTGAACAAGACGAACCACGTAGTTTCCTCCATCCAGTGGGTTCTCCAGTAACCAACTCTCCACC AGGTAACTGGATACAGTACAGCAGTCCTATAGAACACAATCCTCTACAGAACATCAGCAAGTCACCTGTTTTCAGTACCATGAGCCCAACTAATAACGGT CATGTACCTGGGCTGGCTTCGATTCTTCATTCTCAAGCTTCAAGTGCTGTGAATGTTGCACCAATTGGCAGAGACCATGGAAGGAGTAACCTTTCACTCC TTGGAGGTGGCTTCCAACAATCACATTCATTACCCGACTCAAAGTTGAGCCAATATCATGCAAGCATGTCATCTCTGGGTCCTTCCTCATCTAATGGATC AGCAGTCGAAACATTATCGGGACCGCAGTTTCTCTGGGGAAGCCCAAAGACACATTCGGAGATAAATACCATTTCTTCACCCTGGCCAACTCCGCCCACA AGGCATCCTTTTCCATCCAATGGGAAGGGATCTGTCTTGCCGTTTTCAGGTCGTCATGGTTCTTTCCTGAGTGCCCAACAGCATCATCATGTTGGATCTG CTCCATCTGGAGTTCCTCTGGAGAGGCACTTAGGATTTCTGCCTGAGTCTCCGAAATCTTCATTCATGAATCCGGCTTCCTATGGAGGAATTGGTATGGG CCACAACGATGGAAACTTCATGATGAGTATGGGTGCTCGTCCTCCTATGAATGGAGGAGCTAATATCTCACGAACCATGGCAGAGAATGGCTCTTCAAGT TACAGAATGATGTCTTCGTCAAGGCTTAGTCCTGTTTTCTTAGGCAGTAGCCCATATGCAGGACTAACATCTTCTAGCATGGACGGTTTTAGTGAACGTG GTCGTATAAGACGTGCTGAGAATAATGGAAGCCAAGGAGACAACAAGAAACAGTTTCAGCTCGACTTGGATAAGATCATGAAAGGCGAAGATACTCGGAC GACATTAATGATCAAGAATATACCAAACAAGTACACTTCTAAAATGTTGCTGGCTGCCATTGACGAGAAGCACAGGGGGACTTATGATTTCCTCTACTTG CCCATCGATTTTAAGAACAAGTGCAACGTGGGTTATGCTTTTATCAATATGGTGTCTCCTTCGCACATAATCCCATTTTACGAGGCATTCAATGGTAAGA AGTGGGAGAAATTCAACAGTGAGAAAGTTGCTTCATTGGCTTATGCTAGGATCCAGGGGAAGACAGCTCTTGTCAACCATTTCCAGAATTCAAGTCTGAT GAACGAAGACAAACGCTGCCGGCCAATCCTCTTCCGATCTGATGGACAGGAACTGGCGGATCAGATCATTCAGGATCATCTAAACTCCAGCAGTATGAAC ATTCAGTTCCATCAACCAAACGTGTTACATTATGGGGATTCGTCAGGAAGCCCCACCGACGACTACTCTCTCGAGGATTGCTGA
AA sequence Show only first row Show all	>Lus10011968 pacid=23161462 polypeptide=Lus10011968 locus=Lus10011968.g ID=Lus10011968.BGIv1.0 annot-version=v1.0 MIQPLNISKPARNGGLGILSASSDATLFSSSLPVLPHEKLILEERDHGDQAAGNASAIVEKLHPNIESTDLLQNGNAHATGALLPDNEDELLAGIMDDFD LSRLPLSLEDLDDNDLFGSGGGLELETDLQENLSFGISKLNLSDAGNGMPQYGLPTGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQYGDVR TLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDMNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIE FYDVRAAEAALKQLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELEQDEPRSFLHPVGSPVTNSPPGNWIQYSSPIEHNPLQNISKSPVFSTMSPTNNG HVPGLASILHSQASSAVNVAPIGRDHGRSNLSLLGGGFQQSHSLPDSKLSQYHASMSSLGPSSSNGSAVETLSGPQFLWGSPKTHSEINTISSPWPTPPT RHPFPSNGKGSVLPFSGRHGSFLSAQQHHHVGSAPSGVPLERHLGFLPESPKSSFMNPASYGGIGMGHNDGNFMMSMGARPPMNGGANISRTMAENGSSS YRMMSSSRLSPVFLGSSPYAGLTSSSMDGFSERGRIRRAENNGSQGDNKKQFQLDLDKIMKGEDTRTTLMIKNIPNKYTSKMLLAAIDEKHRGTYDFLYL PIDFKNKCNVGYAFINMVSPSHIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKTALVNHFQNSSLMNEDKRCRPILFRSDGQELADQIIQDHLNSSSMN IQFHQPNVLHYGDSSGSPTDDYSLEDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10011968 [exp]	0	1
AT1G13940			Plant protein of unknown funct...		Lus10030419 [exp]	1.7	0.8918
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10023798 [exp]	2.0	0.8806
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10016321 [exp]	5.9	0.8227
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006844 [exp]	7.1	0.8861
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10003405 [exp]	9.6	0.8808
AT5G56610			Phosphotyrosine protein phosph...		Lus10012928 [exp]	11.2	0.8292
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	14.1	0.8700
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10024394 [exp]	16.6	0.8481
AT4G32350			Regulator of Vps4 activity in ...		Lus10023635 [exp]	17.3	0.8252
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10023493 [exp]	19.1	0.8555

Compare expression of checked genes

Lus10011968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.