Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46420 555 / 0 16S rRNA processing protein RimM family (.1) AT2G35020 52 / 7e-07 GlcNAc1pUT2 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1) AT1G31070 51 / 2e-06 GlcNAc1pUT1 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004590 [exp] 1020 / 0 AT5G46420 587 / 0.0 16S rRNA processing protein RimM family (.1) Lus10036227 [exp] 50 / 5e-06 AT1G31070 844 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2) Lus10038366 [exp] 50 / 6e-06 AT1G31070 846 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G353800 [exp] 691 / 0 AT5G46420 553 / 0.0 16S rRNA processing protein RimM family (.1) Potri.001G159700 [exp] 49 / 5e-06 AT2G35020 779 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1) Potri.003G074700 [exp] 47 / 3e-05 AT2G35020 825 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF01782 [flax] [poplar] RimM RimM N-terminal domain CL0350 [flax] [poplar] PRC-barrel PF05239 [flax] [poplar] PRC PRC-barrel domain
Representative CDS sequence Show only first row Show all	>Lus10011969 pacid=23161418 polypeptide=Lus10011969 locus=Lus10011969.g ID=Lus10011969.BGIv1.0 annot-version=v1.0 ATGGAGGCTGTTGAAACGGATAAGAGTGTTTCGGAGCTCGTCGAAGTAGGTTACGTGTCAAGTGTTCATGGGATTCACGGAGAGATTGTTCTAGAGCCAA GTACTGACTTCGCTGAGCTTAGATTCTCCACGCCAGGAAGAAGATGGTTGAAACAATTTGTTTACGGTAAAGAAGTCATTAAAGAAGTTGAGTTAGTGGA AGGAAGGGAAAGGCCTGGGAAGAAGAGTTGGGTGCTTAGACTTGCAGGGCTCGAGTCAGTGGATGAGGCTAAGCAACTTGTTGGATCAACTTTACTTGCG AGGGAAGATGAAAGACCTGAACTTGAGGAAGGGGAGTTCTACACTCGTGATCTGATTGGCATGAGAGTAATTCTCAAGGATACATCTACATGTGTTGGAA CTGTTGTTGACCTTTTCGACAGTGGGGCATCTGACATTTTAAGAGTCATGCTTTACCCATCAAGTGAAGTCCGTGATGCAACTGAAAAGCCAGTGCTGGA AGAAACTAGTGTATCTGGTCGGCTTGTCTGGATTCCGTTTGTTGAAGCAATTGTTCCAGATGTCGACATGAATAAAAGAGAAATGTGGATCACACCACCC AAAGGACTCCTTGAGCTGAATAACCGTGCAGATGAGAGGTCCAAGAAAGAAAGGCGCCAGCTTGAGTGGAAAGAGAGGAAAAAGTCCCAAAGACAGCTTA TAGCTGCGAAAAAAAAGTTAGCTGATATGGGGCAGAAACATGTATTTGATGGCCTCAGATATGGGGAAAAGGACCAGAGGAGCTTGTTGGCAAATGAAAT TGTCACAACAAATCCTAACCTCCTTCAGCATGCACTAAAAAACATCGGGATCTCATCCAACAGGTGGAGTGCAACTAAATTCATCAGCGAAGCTAGAGGC AAGTTAAAGAATGGTTCTTTGAAGATTTCCCAGGATCAGCTTACCTGCTCCAGTATAAACGATTCAGGCCCAACTCACCGTTTTCATGAGAATGGATGCC ATCTTGTATCTGAAGGGAAAATCGCAATTGTCTTGGTCGTAAGGAACCTTGAGAACAAAGGAGCAGACAGTGAAACTTCTATCTCAAAATTATTTTCTGA CGACCAGACGTTTGTAAAGATGGAAGACCGTGGATCTATTCCTTTGGTGTTGGTTTGTGCCAAGCAAGAGATCGAGCCTTTCAAAGAACTGTTTACAAGC AACGATTTCTTTGCATTCGACTGCAACAAGGTTTGGTTTGTGGAAGAAGAGAAGCTCCCCGTTGTTACTAGTTCTGCAGATGAAAACGGGAGGAACGAAA TCTTGATGAAGTCCCCATGGGAAATACTAAAGGCCCCAGTTGGATCTGGAGGTGTTCTTCACTCATTTTCATCACACAACATCTTCAATACTCTAAGTGA AGTAGGTGTCAAATACATTGAGGTTTGCAGCACCAGCAAAATGTCTGGCATCTGGACGCCTATGTTTCCGGGACTGGTCGATACGCAAGGTGCAGACATT GGCATCCAGATCTCTCAAGACTTGACCCGTTCAGAAGAGAGTTTCGACATTGTATTCTCGGTGGAGTTCGCCAAGTCGTTGGAGAGACAGATGGATAAAC TCCATTTCGAAGCGGTCCCTAAGGCGAATTCCCTCGTAAGACTAGTTGACAAAGAGTGGGTGAACGTTGTCCCATCTTCTCCCAACTCGTATGAACTTCG ATGTTCAATATACAGCGCTGTAAATGCTTGTCCCTTGGAGAAAGTGTGTATGGTGGAAATAACAGAATGA
AA sequence Show only first row Show all	>Lus10011969 pacid=23161418 polypeptide=Lus10011969 locus=Lus10011969.g ID=Lus10011969.BGIv1.0 annot-version=v1.0 MEAVETDKSVSELVEVGYVSSVHGIHGEIVLEPSTDFAELRFSTPGRRWLKQFVYGKEVIKEVELVEGRERPGKKSWVLRLAGLESVDEAKQLVGSTLLA REDERPELEEGEFYTRDLIGMRVILKDTSTCVGTVVDLFDSGASDILRVMLYPSSEVRDATEKPVLEETSVSGRLVWIPFVEAIVPDVDMNKREMWITPP KGLLELNNRADERSKKERRQLEWKERKKSQRQLIAAKKKLADMGQKHVFDGLRYGEKDQRSLLANEIVTTNPNLLQHALKNIGISSNRWSATKFISEARG KLKNGSLKISQDQLTCSSINDSGPTHRFHENGCHLVSEGKIAIVLVVRNLENKGADSETSISKLFSDDQTFVKMEDRGSIPLVLVCAKQEIEPFKELFTS NDFFAFDCNKVWFVEEEKLPVVTSSADENGRNEILMKSPWEILKAPVGSGGVLHSFSSHNIFNTLSEVGVKYIEVCSTSKMSGIWTPMFPGLVDTQGADI GIQISQDLTRSEESFDIVFSVEFAKSLERQMDKLHFEAVPKANSLVRLVDKEWVNVVPSSPNSYELRCSIYSAVNACPLEKVCMVEITE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46420			16S rRNA processing protein Ri...		Lus10011969 [exp]	0	1
AT5G27560			Domain of unknown function (DU...		Lus10029915 [exp]	8.8	0.8944
AT2G31890		ATRAP	RAP (.1)		Lus10006144 [exp]	9.1	0.8374
AT2G38780			unknown protein		Lus10016355 [exp]	9.4	0.8345
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10005944 [exp]	14.8	0.8889
AT3G05950			RmlC-like cupins superfamily p...		Lus10029571 [exp]	16.0	0.8561
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10000288 [exp]	19.0	0.8824
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10034053 [exp]	21.1	0.8880
AT2G17972			unknown protein		Lus10026591 [exp]	21.2	0.8456
AT3G07670			Rubisco methyltransferase fami...		Lus10016087 [exp]	30.5	0.8449
AT4G24890		ATPAP24, PAP24	ARABIDOPSIS THALIANA PURPLE AC...		Lus10016356 [exp]	31.0	0.8683

Compare expression of checked genes

Lus10011969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.