Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18100 228 / 2e-78 Ribosomal protein L32e (.1) AT5G46430 224 / 3e-77 Ribosomal protein L32e (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012195 [exp] 245 / 3e-85 AT4G18100 246 / 1e-85 Ribosomal protein L32e (.1) Lus10007541 [exp] 245 / 3e-85 AT4G18100 246 / 1e-85 Ribosomal protein L32e (.1) Lus10004589 [exp] 242 / 3e-84 AT4G18100 247 / 4e-86 Ribosomal protein L32e (.1) Lus10020410 [exp] 241 / 8e-84 AT4G18100 242 / 3e-84 Ribosomal protein L32e (.1) Lus10031699 [exp] 240 / 2e-83 AT4G18100 240 / 2e-83 Ribosomal protein L32e (.1) Lus10009591 [exp] 241 / 2e-82 AT4G18100 243 / 4e-83 Ribosomal protein L32e (.1) Lus10031120 [exp] 242 / 4e-80 AT3G22660 289 / 9e-96 rRNA processing protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G353900 [exp] 232 / 4e-80 AT4G18100 227 / 4e-78 Ribosomal protein L32e (.1) Potri.014G191000 [exp] 232 / 4e-80 AT4G18100 227 / 4e-78 Ribosomal protein L32e (.1) Potri.002G249000 [exp] 229 / 5e-79 AT4G18100 226 / 5e-78 Ribosomal protein L32e (.1) Potri.011G078200 [exp] 227 / 4e-78 AT4G18100 225 / 2e-77 Ribosomal protein L32e (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01655 [flax] [poplar] Ribosomal_L32e Ribosomal protein L32
Representative CDS sequence Show only first row Show all	>Lus10011970 pacid=23161452 polypeptide=Lus10011970 locus=Lus10011970.g ID=Lus10011970.BGIv1.0 annot-version=v1.0 ATGGCGGTGCCACTGTTGACGAAGAAGATCGTGAAGAAGAGGGTCAAACAGTTCAAGAGACCCCAGAGCGATCGGAAGATATGCGTCAAGGAGAACTGGA GGCGGCCAAAGGGTATTGACTCGAGGGTCAGGAGAAAGTTCAAAGGTGTAACATTGATGCCCAACATCGGTTACGGCTCAGACAAGAAAACCCGACACTA TCTTCCCAATGGCTTCAAGAAGTTCGTAGTCCACAACGTTAAGGAGCTCGAGGTTCTGATGATGCACAACAGGACCTACTGTGCCGAAATTGCCCATGAC GTCTCTACCAGAAAGAGAAAGGACATTGTTGAACGTGCCACGCAGTTGGACATTGTCGTCACCAACAAGCTTGCTAGGCTCAGGAGCCAGGAGGACGAGT AG
AA sequence Show only first row Show all	>Lus10011970 pacid=23161452 polypeptide=Lus10011970 locus=Lus10011970.g ID=Lus10011970.BGIv1.0 annot-version=v1.0 MAVPLLTKKIVKKRVKQFKRPQSDRKICVKENWRRPKGIDSRVRRKFKGVTLMPNIGYGSDKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHD VSTRKRKDIVERATQLDIVVTNKLARLRSQEDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18100			Ribosomal protein L32e (.1)		Lus10011970 [exp]	0	1
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10008624 [exp]	1.7	0.9833
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10004220 [exp]	2.8	0.9769
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10022551 [exp]	3.2	0.9627
AT5G35530			Ribosomal protein S3 family pr...		Lus10030503 [exp]	5.2	0.9681
AT5G09510			Ribosomal protein S19 family p...		Lus10033856 [exp]	5.3	0.9636
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10028965 [exp]	6.5	0.9612
AT5G59850			Ribosomal protein S8 family pr...		Lus10023429 [exp]	7.7	0.9407
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10024286 [exp]	8.0	0.9457
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10007805 [exp]	10.1	0.9621
AT4G24830			arginosuccinate synthase famil...		Lus10012800 [exp]	10.5	0.9389

Compare expression of checked genes

Lus10011970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.