Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04330 189 / 2e-61 AtRbcX1 homologue of cyanobacterial RbcX 1, Chaperonin-like RbcX protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004588 [exp] 187 / 5e-61 AT4G04330 119 / 9e-35 homologue of cyanobacterial RbcX 1, Chaperonin-like RbcX protein (.1) Lus10002563 [exp] 40 / 0.0004 AT5G19855 202 / 1e-66 homologue of cyanobacterial RbcX 2, Chaperonin-like RbcX protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G010300 [exp] 182 / 4e-59 AT4G04330 209 / 6e-70 homologue of cyanobacterial RbcX 1, Chaperonin-like RbcX protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02341 [flax] [poplar] RcbX RbcX protein
Representative CDS sequence Show only first row Show all	>Lus10011972 pacid=23161457 polypeptide=Lus10011972 locus=Lus10011972.g ID=Lus10011972.BGIv1.0 annot-version=v1.0 ATGGAATTCTCATCATCATCAGCTACTCCCATTGTACAATCACCGCTTTCATTCTTGCAACCCAACAGCAACATATTATCTGCATATCCATTACCTCCTT TGGCCAGAGAGTACATCTCGTTCTCAATTCGGACCTTGCGGCCAACATCACCGGTCATGACTACTCGTTCAAACAGCAGTAGCTTTCACGTCCGTTGCCA AAAGATGTATGTACCCGGATTTGGAGAGTCTCCGGAGGGAAAGGCAGCAAACTACCTCGTCAGTTTCTTCACTTACATCGCCTTGGAGGTTGTCGCTTCT CAGCTCCAGAGCTATAACAGGGAAGGGTACGCGGAGTTGATGGAATTCGTCGAAGCGAATCCCCTCAAGGACGGCGACGAGTTCTGTGCTAGCCTCATGC GCCAGTCTTCCAGGCACCAGGCCTTTGCTCTTCGCATCTTGGAGGTGAGATCAGCTTACAGTAAGATGGACTTTGAGTGGGACAACCTCAAGAGATTAGC TCTTAAGAAGGTTGGTGATTCCAACACCCGGCTCATGCGAGATTATGTCCTCGAAACCACCCACGTCGACAGCGAAGACAAGTGA
AA sequence Show only first row Show all	>Lus10011972 pacid=23161457 polypeptide=Lus10011972 locus=Lus10011972.g ID=Lus10011972.BGIv1.0 annot-version=v1.0 MEFSSSSATPIVQSPLSFLQPNSNILSAYPLPPLAREYISFSIRTLRPTSPVMTTRSNSSSFHVRCQKMYVPGFGESPEGKAANYLVSFFTYIALEVVAS QLQSYNREGYAELMEFVEANPLKDGDEFCASLMRQSSRHQAFALRILEVRSAYSKMDFEWDNLKRLALKKVGDSNTRLMRDYVLETTHVDSEDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10011972 [exp]	0	1
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10025847 [exp]	1.7	0.9645
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10037924 [exp]	2.6	0.9129
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	3.0	0.9335
AT1G70820			phosphoglucomutase, putative /...		Lus10009327 [exp]	3.2	0.9167
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10038652 [exp]	3.7	0.9027
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10038253 [exp]	3.7	0.9434
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	4.9	0.9079
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10011035 [exp]	6.0	0.8931
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10040314 [exp]	6.5	0.9155
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033720 [exp]	8.5	0.9053

Compare expression of checked genes

Lus10011972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.