Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29530 48 / 3e-06 unknown protein AT4G18070 45 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004585 [exp] 522 / 0 AT1G29530 54 / 3e-08 unknown protein Lus10015254 [exp] 114 / 1e-29 AT1G29530 50 / 3e-07 unknown protein Lus10025373 [exp] 78 / 2e-16 AT1G29530 51 / 1e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G077700 [exp] 129 / 4e-34 AT1G29530 50 / 1e-06 unknown protein Potri.001G354600 [exp] 104 / 3e-25 AT1G29530 54 / 2e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011974 pacid=23161477 polypeptide=Lus10011974 locus=Lus10011974.g ID=Lus10011974.BGIv1.0 annot-version=v1.0 ATGCCATCAGGTGCGAAGAAGAGAAAGGCTGCTAAGAAAAAGAAGCAACAGCAGGCCGACCCCTCTGGAAACAACTCACAAGGAAATGGCGATAAAAGGG TCGAGGATGAGAGGGATAGTGATACTACCAGTGAGTTAAATTCCCCTGCATCAGAAGGGATCCCTCATCACCAGCATACATTTAGCGAGGCCAATGGAGA AGCTGAGAAAAATGGCCAATCGCAGGATGAACCGATTGTTGCCGAGAACAAACTCGAAGCCAAAGAAGGAAATGAGGAAGCTGGACAAGTACAGGATGTT GAAGTTAAAATCGAGGAAGACTTGAAGAGCCTCGAGGTTAGCATTGAGCATGTCGATTCTGAAAAGGTTTCGAATGGTGACAGTAGCTCAACCAGTAGTT CTTCTGATGACGAGTCCTCTGCAGTTGATAATAAGGGTGGTGAAGAATTGCAAAATGATGCTGCTATAGCACCTAAGAACGAAGAGGTGATACCGATTCC TGAAACTAATGCAGTTATTGTCACTTCTGAAGAGGCGGTGATGCCGAACGAAGTAAGCAACTATACAGTTAAGAACGCTGCTGCACCTCTTGATTCGGAT ACGCCTGTGGTGCCTATGTCGGAGGTCGTGGAGCGTCAATTGGAAGCTACTCAAGTTGTGGATTCTGAGGTTATCGACATAGTTGAAAGAGGATTGAAGG AAAATGAGGTGAAGTCGTTGCCAAAATCTTATCCGTCTAACGAAGTGCCAGTGCCTTTGGATTCTGGCAAAAATGAAGAAGTTATGCCCACCACTTCTCA TCAGAGTGCTGAGATGGGTGTTTCTTATGTAACTGTGAAATCATTGACGACATCAGGTGCTGTTGAGACCGCTGTCAATCAGAACCCCCCTGGTACTGAA ACCAGCGCCAAAGACACCAACCTTTCTGAATCGATTGAGAAACAGCCTCTGATAGCCTCTGCGAAACGTGTATCCCAGCGAACATCGTGTCTGAATTGCT GTGGCTTGTTTGATGCTTTCACTAGCTCAGATCGGTGA
AA sequence Show only first row Show all	>Lus10011974 pacid=23161477 polypeptide=Lus10011974 locus=Lus10011974.g ID=Lus10011974.BGIv1.0 annot-version=v1.0 MPSGAKKRKAAKKKKQQQADPSGNNSQGNGDKRVEDERDSDTTSELNSPASEGIPHHQHTFSEANGEAEKNGQSQDEPIVAENKLEAKEGNEEAGQVQDV EVKIEEDLKSLEVSIEHVDSEKVSNGDSSSTSSSSDDESSAVDNKGGEELQNDAAIAPKNEEVIPIPETNAVIVTSEEAVMPNEVSNYTVKNAAAPLDSD TPVVPMSEVVERQLEATQVVDSEVIDIVERGLKENEVKSLPKSYPSNEVPVPLDSGKNEEVMPTTSHQSAEMGVSYVTVKSLTTSGAVETAVNQNPPGTE TSAKDTNLSESIEKQPLIASAKRVSQRTSCLNCCGLFDAFTSSDR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29530			unknown protein		Lus10011974 [exp]	0	1
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006475 [exp]	1.4	0.8751
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10001665 [exp]	3.0	0.8290
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006474 [exp]	3.7	0.8463
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	6.3	0.8120
AT3G07460			Protein of unknown function, D...		Lus10038238 [exp]	12.1	0.7447
AT1G52140			unknown protein		Lus10034944 [exp]	12.2	0.7404
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Lus10041947 [exp]	13.2	0.7705
AT1G30700			FAD-binding Berberine family p...		Lus10038439 [exp]	13.3	0.7668
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	14.0	0.7678
AT5G22930			Protein of unknown function (D...		Lus10037944 [exp]	15.6	0.7535

Compare expression of checked genes

Lus10011974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.