Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18060 495 / 2e-177 SH3 domain-containing protein (.1) AT4G34660 313 / 2e-105 SH3 domain-containing protein (.1.2.3) AT1G31440 193 / 1e-57 SH3 domain-containing protein (.1) AT4G39020 84 / 4e-19 SH3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004584 [exp] 644 / 0 AT4G18060 549 / 0.0 SH3 domain-containing protein (.1) Lus10015253 [exp] 572 / 0 AT4G18060 540 / 0.0 SH3 domain-containing protein (.1) Lus10028783 [exp] 345 / 7e-118 AT4G34660 596 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017501 [exp] 342 / 1e-116 AT4G34660 598 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10017500 [exp] 323 / 4e-109 AT4G34660 569 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10028784 [exp] 320 / 5e-108 AT4G34660 563 / 0.0 SH3 domain-containing protein (.1.2.3) Lus10033292 [exp] 256 / 1e-82 AT1G31440 432 / 3e-150 SH3 domain-containing protein (.1) Lus10034755 [exp] 230 / 1e-71 AT1G31440 397 / 1e-135 SH3 domain-containing protein (.1) Lus10028785 [exp] 203 / 3e-64 AT4G34660 338 / 2e-117 SH3 domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G354700 [exp] 534 / 0 AT4G18060 538 / 0.0 SH3 domain-containing protein (.1) Potri.011G077500 [exp] 533 / 0 AT4G18060 514 / 0.0 SH3 domain-containing protein (.1) Potri.004G161300 [exp] 334 / 2e-113 AT4G34660 515 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.009G123200 [exp] 333 / 3e-113 AT4G34660 566 / 0.0 SH3 domain-containing protein (.1.2.3) Potri.001G128800 [exp] 287 / 5e-95 AT4G34660 362 / 6e-124 SH3 domain-containing protein (.1.2.3) Potri.003G105200 [exp] 273 / 1e-89 AT4G34660 325 / 1e-109 SH3 domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [flax] [poplar] SH3 PF00018 [flax] [poplar] SH3_1 SH3 domain
Representative CDS sequence Show only first row Show all	>Lus10011975 pacid=23161415 polypeptide=Lus10011975 locus=Lus10011975.g ID=Lus10011975.BGIv1.0 annot-version=v1.0 ATGGACGCACTGAGGAAGCAAGCCAGCAGGCTGAGGGATCAAGTCGCAAAGCAACAGCAAGCTGTGATAAAGCAATTCAGTGCCAGTGGCTACGAGAGCT CGGATTCCGTAGTAATCGACGAGGTTGAGCTGCACAGGCATCAACAGCTGGAGAAGCTCTACAGGACTACTCGAGCTGGCAGAGATTTTCAGAAGGACAT TGTGAGAGCAGCGGAAGCGCTTACTGCAATTGGATATAAACATATTGAAGCAGGAACCAAATTCTCAGAGGATTGCTGCAGATATGGAACTGAGAACATC AGCGACGCCATGCTGGCGAAAGCTGCAGCTATATATGGTGATGCTCGTAAGCATGTCGAGAAGGAGACCGAGGATTTGAATACCGTGCTCGCTTCTCAGG TCTTGGATCCTCTTAGGGCAATGGTTGTTGGTGCTCCTTTAGAGGATGCTCGGCATCTGGCTCAACGTTATAGTCGAATGAGGCAAGAAGCTGAATTACA GGCTACTGAAGTTTCGAGAAGGCAAGCGCGAGTAAGGGAAGCCCCAATTCCTGAGAACGTTGCGAAGTTGCATGCAGCCGAGGCAAAGATGCAAGAACTG CGAGCAAACATGGCAGTTCTAGGTAAAGAAGCTGCTGCCGCATTGGCTGCAGTTGAAGCACAGCAGCAAAGATTGACATTCCAAAGGCTTGTTTCTTTGG TTGAAGGTGAAAAGAATTACCACTTGCGAATTGGCGCTATACTCAGTGAAGTCGAAACCGAGATGGTTTTGGATAAACAACGGAGAGATGGAGCTCCTCC TGTCATCCCATCTACAGTAACTCCATTGCAAAATGGCTCAGAGAAAAGCACATACTTCTTGGCTGAAGCAACACATCCATTTTATGCAGAAACAGACAAG GAGCTGAGTTTGGCCGTTGGGGACTTCATCGTCGTTCGAAAGGTTAACCCGACTGGCTGGTCGGAAGGAGAATGCAAAGGGAAATCAGGCTGGTTCCCTT CAGCCTACGTTGAGCGGCGCCAGAGGCTTCCTACTGCCCTTTAG
AA sequence Show only first row Show all	>Lus10011975 pacid=23161415 polypeptide=Lus10011975 locus=Lus10011975.g ID=Lus10011975.BGIv1.0 annot-version=v1.0 MDALRKQASRLRDQVAKQQQAVIKQFSASGYESSDSVVIDEVELHRHQQLEKLYRTTRAGRDFQKDIVRAAEALTAIGYKHIEAGTKFSEDCCRYGTENI SDAMLAKAAAIYGDARKHVEKETEDLNTVLASQVLDPLRAMVVGAPLEDARHLAQRYSRMRQEAELQATEVSRRQARVREAPIPENVAKLHAAEAKMQEL RANMAVLGKEAAAALAAVEAQQQRLTFQRLVSLVEGEKNYHLRIGAILSEVETEMVLDKQRRDGAPPVIPSTVTPLQNGSEKSTYFLAEATHPFYAETDK ELSLAVGDFIVVRKVNPTGWSEGECKGKSGWFPSAYVERRQRLPTAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18060			SH3 domain-containing protein ...		Lus10011975 [exp]	0	1
AT4G35140			Transducin/WD40 repeat-like su...		Lus10023993 [exp]	1.4	0.8196
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10023414 [exp]	2.4	0.7753
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	3.2	0.8107
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10030807 [exp]	4.5	0.7522
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10037969 [exp]	5.3	0.7731
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10032362 [exp]	13.0	0.7150
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	13.6	0.7375
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Lus10019241 [exp]	18.7	0.7340
AT4G19020		CMT2	chromomethylase 2 (.1)		Lus10010796 [exp]	21.0	0.6902
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10032965 [exp]	26.2	0.7357

Compare expression of checked genes

Lus10011975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.