Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02520 335 / 2e-106 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT1G02530 334 / 3e-106 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G18050 330 / 1e-104 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT4G01830 310 / 1e-97 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT4G01820 307 / 3e-96 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1) AT2G47000 302 / 2e-94 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT5G46540 300 / 1e-93 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT3G62150 285 / 4e-88 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT3G55320 198 / 1e-57 ABCB20, PGP20 ATP-binding cassette B20, P-glycoprotein 20 (.1) AT3G28860 197 / 5e-57 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004583 [exp] 462 / 5e-154 AT4G18050 1660 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Lus10004519 [exp] 323 / 1e-108 AT1G02520 636 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10038049 [exp] 319 / 2e-100 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010068 [exp] 319 / 2e-100 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10009988 [exp] 318 / 3e-100 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010067 [exp] 306 / 1e-95 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010012 [exp] 302 / 1e-94 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10038050 [exp] 300 / 2e-93 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10009989 [exp] 297 / 2e-92 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G354900 [exp] 362 / 3e-116 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.014G113500 [exp] 327 / 3e-103 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 315 / 5e-99 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113000 [exp] 313 / 3e-98 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187500 [exp] 312 / 7e-98 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 311 / 2e-97 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.014G113200 [exp] 308 / 2e-96 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G003000 [exp] 301 / 7e-94 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.008G050400 [exp] 204 / 2e-59 AT3G55320 2223 / 0.0 ATP-binding cassette B20, P-glycoprotein 20 (.1) Potri.010G210100 [exp] 204 / 2e-59 AT3G55320 2237 / 0.0 ATP-binding cassette B20, P-glycoprotein 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10011976 pacid=23161404 polypeptide=Lus10011976 locus=Lus10011976.g ID=Lus10011976.BGIv1.0 annot-version=v1.0 ATGTTTTACCGATCATTGCAGGTAATGTACGAGGAAACGAGTCAAGTGGGGAACGATGCAGTCGGAGGAATGCGGACCGTGGCATCCTTCTGTGCAGAGA ACAAGGTGATCCATTTGTACCATCAGAAATGCAAGAATCCAATTGATAATGCGGTTCGAGCAGGGGTGACTTGTGGGTTCGGGTTCGGATTCTCGTTCTT GGTACTCAACTGCATCAATGCCCTCCTTTTCTACTTGGGAGCTAAACTAGTAAAGAAAGGGATGGCCACTTTCCAGGATGTTTTCAAGGTTTTCTTTGCA CTGACGATTGCAGCAGTTGAGATTTCTCAATCTAGCGGTGTAGCTCCTGACAGCAGGAAGGCGAAGGATTCTGCAGCTTCGATATTTGCTATCCTGGACA GAAAGCCCAGGATCGATTCTAGCGTACACGAAGGGATCACTCTAGAGAATTTGACAGGAGACATTGAGCTTCAGAATGTCAGCTTTCGCTACCCGATGCG ACCGAATGTGCAAGTCTTCAGGGATTTGAGTCTCACTATCCCATCTGGAAAGACTGTAGCTCTAGTTGGAGAAAGTGGAAGTGGGAAATCAACAGTAATA AGTCTGATAGAAAGATTCTACGACCCAGAATCAGGCACTGTGTTCTTAGACAAAGTAGACCTCAAGAAACTGAAGCTCACCTGGCTAAGACAGCAGATGG GTCTAGTCGGGCAAGAACCGATCCTCTTCAACGACACAATCCGTGCGAACATTTCATACGGAAAACACGAAGGAGGCATCACGAGGAAGAGATCATTGCG GCAGCCACGGCATCCAACGCCAACAGCTTCATAA
AA sequence Show only first row Show all	>Lus10011976 pacid=23161404 polypeptide=Lus10011976 locus=Lus10011976.g ID=Lus10011976.BGIv1.0 annot-version=v1.0 MFYRSLQVMYEETSQVGNDAVGGMRTVASFCAENKVIHLYHQKCKNPIDNAVRAGVTCGFGFGFSFLVLNCINALLFYLGAKLVKKGMATFQDVFKVFFA LTIAAVEISQSSGVAPDSRKAKDSAASIFAILDRKPRIDSSVHEGITLENLTGDIELQNVSFRYPMRPNVQVFRDLSLTIPSGKTVALVGESGSGKSTVI SLIERFYDPESGTVFLDKVDLKKLKLTWLRQQMGLVGQEPILFNDTIRANISYGKHEGGITRKRSLRQPRHPTPTAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10011976 [exp]	0	1
AT5G24600			Protein of unknown function, D...		Lus10015590 [exp]	6.3	0.7943
AT5G62140			unknown protein		Lus10038887 [exp]	10.8	0.8009
					Lus10018313 [exp]	11.0	0.8054
AT2G41970			Protein kinase superfamily pro...		Lus10021070 [exp]	11.9	0.6988
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10009231 [exp]	14.1	0.7236
AT3G58480			calmodulin-binding family prot...		Lus10029323 [exp]	14.5	0.7507
AT1G76860			Small nuclear ribonucleoprotei...		Lus10026326 [exp]	14.6	0.7964
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	16.1	0.7763
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013100 [exp]	21.6	0.7203
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10030297 [exp]	24.2	0.7706

Compare expression of checked genes

Lus10011976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.