Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47000 159 / 1e-43 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT4G18050 159 / 2e-43 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT1G02520 152 / 4e-41 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT3G62150 150 / 1e-40 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT5G46540 146 / 4e-39 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT1G02530 146 / 5e-39 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G01830 145 / 1e-38 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT4G01820 143 / 4e-38 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1) AT4G25960 134 / 9e-35 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT3G28380 129 / 3e-33 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009989 [exp] 154 / 8e-42 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010012 [exp] 154 / 1e-41 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10038050 [exp] 154 / 1e-41 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10004520 [exp] 153 / 1e-41 AT2G47000 1145 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010068 [exp] 153 / 3e-41 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038049 [exp] 152 / 6e-41 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10009988 [exp] 151 / 7e-41 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010067 [exp] 145 / 1e-38 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10000052 [exp] 129 / 9e-37 AT3G62150 284 / 2e-89 ATP-binding cassette B21, P-glycoprotein 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G187500 [exp] 159 / 2e-43 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.001G354900 [exp] 156 / 1e-42 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.002G187400 [exp] 155 / 5e-42 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113500 [exp] 154 / 6e-42 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113000 [exp] 154 / 8e-42 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 153 / 2e-41 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.014G113200 [exp] 150 / 1e-40 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G003000 [exp] 149 / 6e-40 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.003G094400 [exp] 127 / 1e-32 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139700 [exp] 127 / 2e-32 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10011977 pacid=23161483 polypeptide=Lus10011977 locus=Lus10011977.g ID=Lus10011977.BGIv1.0 annot-version=v1.0 ATGCCGCAAGGGGTCGATACTATGGTAGTGGAGCACGGGACTCAAATGTCCGGTAGACAGAAGCAGAGGATTGCGATTGCTAGGGCCATACTGAAGAATC TGAAGATTCTTTTGCTTGATGAGGCGACGAGCGCGTTGGATTCGGAGTCTGAACGAGTCGTTCAAGATGTGTTAGAGGGAGCGATGTCGAACCGGACGAC TGTAGTGGTGGCGCATCGGCTGACGACCATCAGGAATGCGGATGCTATCGCGGTTGTCCACAGAGGGAAGATTGTTGAGAAAAGGCGGGTATTCTCAGCT AATCCGTCCCCAGGAGGATCGAAAAAAGCTGAACAGCAACAGTTTCAAGCATCAGGTGAAATTAGCCAGCAGGAGAAAGAAATGATGATGACGCCGACTT CAAGGTCAGGAAGTGGGAGGCAATTATCCATCCAGAGATCATTCAGCAGAGATTCAACGGATGGCAGGCCATCCTTCTCCATAACAGGCATTGCATTAGG CATCCCTCCGCGGCCAATCGAAATCGAAGAGATCCCTCCTAAGGGAGACGAGTTTCCGGAAGACGATGACGAAGAAGCAGCAAAGAAGAAACCGAAAAAG GTCTCTCAAAAGACTAGTAGCGTTGAACAAGCCCGGAATCGGAGTGCTTCTGGCCGGAAGCGTAGCTGCAGCAGTTCACGGCGTGATTTTCCCAGTATTC GGCCTTCTGATGGCGAATGCGATCAAGATGTTCTTCGAGCCTCCGCACCAGCTGAAGAAGGACTCGAGCTTTTGGGCGTTGATGTACGTGACGATCGGGG CAGTGAACTGTGTGGCTTTACCGGCGCAGCACTGCTTCTTTGGGATTGCGGGAGGGAAGCTGATCGAGAGGATTCGTTCGTTGACTTTCGAAAGAGTTGT TCATCAGGAAATTAG
AA sequence Show only first row Show all	>Lus10011977 pacid=23161483 polypeptide=Lus10011977 locus=Lus10011977.g ID=Lus10011977.BGIv1.0 annot-version=v1.0 MPQGVDTMVVEHGTQMSGRQKQRIAIARAILKNLKILLLDEATSALDSESERVVQDVLEGAMSNRTTVVVAHRLTTIRNADAIAVVHRGKIVEKRRVFSA NPSPGGSKKAEQQQFQASGEISQQEKEMMMTPTSRSGSGRQLSIQRSFSRDSTDGRPSFSITGIALGIPPRPIEIEEIPPKGDEFPEDDDEEAAKKKPKK VSQKTSSVEQARNRSASGRKRSCSSSRRDFPSIRPSDGECDQDVLRASAPAEEGLELLGVDVRDDRGSELCGFTGAALLLWDCGREADREDSFVDFRKSC SSGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Lus10011977 [exp]	0	1
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10042640 [exp]	1.0	0.9627
AT5G42230		SCPL41	serine carboxypeptidase-like 4...		Lus10023444 [exp]	7.1	0.9402
					Lus10023587 [exp]	10.4	0.9338
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10024216 [exp]	12.0	0.9338
					Lus10007927 [exp]	13.4	0.9338
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Lus10027855 [exp]	14.7	0.9338
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	15.9	0.9338
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10042202 [exp]	17.0	0.9338
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10039026 [exp]	18.0	0.9338
AT2G34320			Polynucleotidyl transferase, r...		Lus10039942 [exp]	19.0	0.9338

Compare expression of checked genes

Lus10011977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.