Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 374 / 5e-129 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G17010 361 / 6e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 359 / 3e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G78550 345 / 6e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 343 / 3e-117 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 267 / 4e-87 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 250 / 1e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 241 / 7e-77 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 229 / 6e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G55970 226 / 5e-71 ATJRG21 jasmonate-regulated gene 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011980 [exp] 636 / 0 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011981 [exp] 566 / 0 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10015252 [exp] 476 / 4e-169 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10004582 [exp] 423 / 2e-149 AT1G17020 231 / 2e-74 senescence-related gene 1 (.1) Lus10026173 [exp] 397 / 6e-138 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10022292 [exp] 379 / 3e-131 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10011985 [exp] 360 / 3e-123 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10032574 [exp] 335 / 2e-113 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10030995 [exp] 311 / 3e-104 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355100 [exp] 455 / 7e-161 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G382400 [exp] 422 / 4e-148 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 407 / 3e-142 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.009G025900 [exp] 352 / 1e-120 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355200 [exp] 332 / 2e-112 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.009G022800 [exp] 302 / 6e-101 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023600 [exp] 270 / 3e-88 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G201000 [exp] 266 / 8e-87 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 265 / 4e-86 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 244 / 5e-78 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10011979 pacid=23161429 polypeptide=Lus10011979 locus=Lus10011979.g ID=Lus10011979.BGIv1.0 annot-version=v1.0 ATGATGGAACAAGAGCTAACAAAGCTAGGAAGCTCCCTGCCAGTGCCATGCGTTCAGCAACTGGCCAAACATCCCCTCCTCGCCTCCGCCCCTCCCCGTT TCATCCGCCATGATCCACACCGTCCACGCAACAATACCACCATCAAATCTACGGCTCAAGTTCCTTTGATCGATTTGGAGAAACTACTATCCTCAGATCA AGAGCTGGATAGGCTCCACGACGCTTGCAAAGATTGGGGCTTCTTCCAGTTGGTTAACCATGGGGTGAGCGATTCATTGGTGGAGAGAGTGAAGAAGGAG ATTAAAGAGTGGTTCAGCATTCCAATGGAAGAGAAGAAGAAGTTTTGGCAGAGATGTGGAGATTTGGAAGGTTTTGGACAAGCCTTTGTGGTTTCTCAAG AGCAGAAGCTAGATTGGGGAGATATGGTCTACCTCACTAGCCTCCCTACACATGAGAGGAGACCTTACCTCTTCCCTTTGTTGCCTCTCACACTCAGGGA TACGCTAGAAGAATACTCAACGGCACTGAAGAGTCTGGCCATGAAGATTCTGAATCTGATGGCCAAAGCTCTAGGGATGGACCAAAATGACATGAATGTG TTGTTCGACGAAGAAGGGTGGCAGCTATTCCGGATGAACTATTATCCACCGTGCCCGCAGCCGGAGTTGGTGATGGGTCTCAACTCTCACTCCGACATCG TCGGACTCACCATCCTGTTGGAAGTCACCTCCGATACACCGGCCGGGTTACAGGTCAAGAAAGATGGATATTGGGTTCCGGTTACGCCTCTCCCTAATGC GTTTGTTGTGAACGTCGGCGACTCGTTGGAGATACTGAGTAACGGAGTTTACAAGAGCATCGAGCATCGAGCCACCGTGAACTCGAAAACAGAGAGGATT ACGGTGGCCACATTCCTGAGCCCGAGGTTAGACGGAGAGTTCGGCCCAGCCCAAAATCTAATCACTCCCGACTCTCCGGCACAGTTCAAGAGGATGGGCG TAAGAGACTATTTCAAAGGCTTTGTTAAGCGGGAACTCAAAGGAAAATCTTACATCGAAGTTATGAAGATTCATAACCATTAG
AA sequence Show only first row Show all	>Lus10011979 pacid=23161429 polypeptide=Lus10011979 locus=Lus10011979.g ID=Lus10011979.BGIv1.0 annot-version=v1.0 MMEQELTKLGSSLPVPCVQQLAKHPLLASAPPRFIRHDPHRPRNNTTIKSTAQVPLIDLEKLLSSDQELDRLHDACKDWGFFQLVNHGVSDSLVERVKKE IKEWFSIPMEEKKKFWQRCGDLEGFGQAFVVSQEQKLDWGDMVYLTSLPTHERRPYLFPLLPLTLRDTLEEYSTALKSLAMKILNLMAKALGMDQNDMNV LFDEEGWQLFRMNYYPPCPQPELVMGLNSHSDIVGLTILLEVTSDTPAGLQVKKDGYWVPVTPLPNAFVVNVGDSLEILSNGVYKSIEHRATVNSKTERI TVATFLSPRLDGEFGPAQNLITPDSPAQFKRMGVRDYFKGFVKRELKGKSYIEVMKIHNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011979 [exp]	0	1
AT3G01430			unknown protein		Lus10014527 [exp]	1.7	0.9797
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	2.2	0.9814
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	2.8	0.9812
AT2G05910			Protein of unknown function (D...		Lus10033432 [exp]	3.5	0.9770
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10036579 [exp]	3.5	0.9691
AT1G67910			unknown protein		Lus10023632 [exp]	4.2	0.9666
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10002246 [exp]	7.1	0.9740
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10038896 [exp]	7.1	0.9671
AT5G05130			DNA/RNA helicase protein (.1)		Lus10027296 [exp]	7.7	0.9662
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10019970 [exp]	8.7	0.9616

Compare expression of checked genes

Lus10011979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.