Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 348 / 7e-119 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G17010 344 / 2e-117 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 340 / 4e-116 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G78550 336 / 3e-114 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 326 / 2e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 257 / 2e-83 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 230 / 6e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 214 / 1e-66 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 212 / 2e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G49390 204 / 5e-63 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011979 [exp] 598 / 0 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10011981 [exp] 596 / 0 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10015252 [exp] 472 / 7e-168 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10022292 [exp] 378 / 8e-131 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10026173 [exp] 373 / 2e-128 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10004582 [exp] 357 / 2e-123 AT1G17020 231 / 2e-74 senescence-related gene 1 (.1) Lus10011985 [exp] 355 / 2e-121 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10032574 [exp] 347 / 3e-118 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10030995 [exp] 308 / 4e-103 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355100 [exp] 428 / 1e-150 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G382400 [exp] 396 / 5e-138 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 393 / 1e-136 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.009G025900 [exp] 355 / 9e-122 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355200 [exp] 313 / 3e-105 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.009G022800 [exp] 288 / 2e-95 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G201000 [exp] 257 / 2e-83 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 255 / 2e-82 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 248 / 1e-79 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 223 / 4e-70 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10011980 pacid=23161479 polypeptide=Lus10011980 locus=Lus10011980.g ID=Lus10011980.BGIv1.0 annot-version=v1.0 ATGGAAGAGCTAACCAAGCTGGGGGGCTCCCTGCCAGTGCCATGCGTTCAGGAGCTGGCCAAGGATCCACTCCTAACCTCCGTTCCTCCCCGTTTCATCC GTCACGAACCACGCGATGATGCTACTGTCAAATCTACGGCTCAAGTTCCTTTGGTCGATTTGGAGAAACTACTATCTTCAGATCAAGAGCTGGATAGGCT CCACGACGCTTGCAAAGATTGGGGCTTCTTCCAGTTGGTTAACCATGGGGTGAGCGATTCATTGGTGGAGAGAGTGAAGAAGGAGATTAAAGAGTGGTTC AGCATTCCAATGGAAGAGAAGAAGAAGTTTTGGCAGAGATGTGGAGATTTGGAAGGTTTTGGACAAGCCTTTGTGGTTTCTCAAGAGCAGAAGCTAGATT GGGGAGATATGTTCTACATCACTAGCCTTCCTACACATCTAAGGAGACCTTATCTCTTCCCCTTGTTGCCTCTTTCACTCAGGAATACATTGGAAGAATA TTCAGCAGCACTGAAGAGTTTGGCCATGAAGATTTTGAACCTGATGGCTGAAGCTCTAGGGATGGACCGAACTGACATGAACGTGTTGTTTGGAGAAGAA GGGTGGCAGCAATTTCGAATGAACTATTATCCACCGTGCCCGCAGCCGGAGCTGGTGATGGGTCTCAACTCACACTCTGACGCTGTCGGGCTCACAATAC TGCTACAAGTGACGAGCGATACGCCGGGGTTACAGGTCAAGAACGATGGATATTGGGTTCCCGTTACGCCTCTGCCGGATGCGTTAATCGTAAATGTGGG CGACATTTTGGAGATTGTGAGCAACGGGGTTTACAAAAGCGTCGAACATCGAGCTACCGTGAACTCAAAAAAGGAGAGGATCTCAGTGGCCACATTCTTG AGCCCGAGGTTAGACGGAGATTTGGGCCCAGCTCCGAGCCTAATTACTCCCACCTCCCCAACCCAGTTTAAGAGGATAAGTGTAACAGACTACTTCAAAG GATTTTTCGGACGGGAGCTCACTGGCAAGTCTTACGTCGATGTCATGAGGATTCACAACCACTAA
AA sequence Show only first row Show all	>Lus10011980 pacid=23161479 polypeptide=Lus10011980 locus=Lus10011980.g ID=Lus10011980.BGIv1.0 annot-version=v1.0 MEELTKLGGSLPVPCVQELAKDPLLTSVPPRFIRHEPRDDATVKSTAQVPLVDLEKLLSSDQELDRLHDACKDWGFFQLVNHGVSDSLVERVKKEIKEWF SIPMEEKKKFWQRCGDLEGFGQAFVVSQEQKLDWGDMFYITSLPTHLRRPYLFPLLPLSLRNTLEEYSAALKSLAMKILNLMAEALGMDRTDMNVLFGEE GWQQFRMNYYPPCPQPELVMGLNSHSDAVGLTILLQVTSDTPGLQVKNDGYWVPVTPLPDALIVNVGDILEIVSNGVYKSVEHRATVNSKKERISVATFL SPRLDGDLGPAPSLITPTSPTQFKRISVTDYFKGFFGRELTGKSYVDVMRIHNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011980 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011981 [exp]	1.7	0.8894
					Lus10025503 [exp]	2.4	0.8899
AT5G66930			unknown protein		Lus10000838 [exp]	5.1	0.8592
AT3G50845			Protein of unknown function (D...		Lus10014311 [exp]	5.3	0.9132
AT3G02645			Plant protein of unknown funct...		Lus10033668 [exp]	7.4	0.7848
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10035456 [exp]	13.0	0.8859
					Lus10013963 [exp]	14.1	0.8784
AT3G03530		NPC4	non-specific phospholipase C4 ...		Lus10028492 [exp]	16.2	0.8116
AT4G15050			Protein of Unknown Function (D...		Lus10002231 [exp]	17.0	0.7787
AT3G05610			Plant invertase/pectin methyle...		Lus10015211 [exp]	18.7	0.8755

Compare expression of checked genes

Lus10011980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.