Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 340 / 1e-115 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G78550 332 / 1e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 332 / 3e-112 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 329 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G25310 325 / 9e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 255 / 2e-82 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 231 / 6e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 209 / 1e-64 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 207 / 2e-63 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G49390 200 / 3e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011980 [exp] 596 / 0 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011979 [exp] 528 / 0 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10015252 [exp] 468 / 4e-166 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10026173 [exp] 377 / 8e-130 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10022292 [exp] 369 / 8e-127 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10011985 [exp] 353 / 2e-120 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10032574 [exp] 346 / 1e-117 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004582 [exp] 310 / 4e-105 AT1G17020 231 / 2e-74 senescence-related gene 1 (.1) Lus10030995 [exp] 295 / 5e-98 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355100 [exp] 424 / 9e-149 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G381700 [exp] 393 / 2e-136 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G382400 [exp] 391 / 1e-135 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.009G025900 [exp] 349 / 3e-119 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355200 [exp] 308 / 4e-103 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.009G022800 [exp] 289 / 8e-96 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G201000 [exp] 258 / 2e-83 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 250 / 2e-80 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 245 / 2e-78 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 223 / 1e-69 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10011981 pacid=23161413 polypeptide=Lus10011981 locus=Lus10011981.g ID=Lus10011981.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAGCAGAAGGAGTTACCAAATAAGCTAGGGAAGTGCCTCCCAGTTCCTTGGGTTCAAGAGCTGGCCAAAGATCCTCTCTTCGCCGCCGCCG TTCCTCCTCGCTACATCCGTCAACCACATGATGCTATCGTCAGTTCAGCCGTTGAAGTTCCCGTTATTGATCTTCGCAAAATAGTGTGTCCGCCGTCCAC TGACGACGTCGCCGACGACGAGCTTGGCAGGCTCCACGAAGCTTGCAAACATTGGGGTTTCTTCCAGTTGGTTAATCATGGGGTGAGCAATGCATTAGTG GAGAGAGTGAAGAAGGAGATTCAAGAATGGTTTGACATTCCAATGGAAGAAAAGAAGAAGTTTTGGCAGAGATATGGAGATTTGGAAGGCTTTGGGCAAG CCTTTGTGGTATCCGAAGAGCAAAAGCTTGATTGGGGAGACATGTTCTACATCACTAGCCTTCCTACACATCTAAGGAGACCTTATCTCTTCCCCTTGTT GCCTCTTTCACTCAGGAATACATTGGAAGAATATTCAGCAGCACTGAAGAGTTTGGCCATGAAGATTTTGAACCTGATGGCTGAAGCTCTAGGGATGGAC CGAACTGACATGAACGTGTTGTTTGGAGAAGAAGGGTGGCAGCAATTTCGAATGAACTATTATCCACCGTGCCCGCAGCCGGAGCTGGTGATGGGTCTCA ACTCACACTCTGACGCTGTCGGGCTCACAATACTGCTACAAGTGACGAGCGATACGCCGGGGTTACAGGTCAAGAACGATGGATATTGGGTTCCCGTTAC GCCTCTGCCGGATGCGTTAATCGTAAATGTGGGCGACATTTTGGAGATTGTGAGCAACGGGGTTTACAAAAGCGTCGAACATCGAGCTACCGTGAACTCA AAAAAGGAGAGGATCTCAGTGGCCACATTCTTGAGCCCGAGGTTAGACGGAGATTTGGGCCCAGCTCCGAGCCTAATTACTCCCACCTCCCCAACCCAGT TTAAGAGGATAAGTGTAACAGACTACTTCAAAGGATTTTTCGGACGGGAGCTCACTGGCAAGTCTTACGTCGATGTCATGAGGATTCACAACCACTAA
AA sequence Show only first row Show all	>Lus10011981 pacid=23161413 polypeptide=Lus10011981 locus=Lus10011981.g ID=Lus10011981.BGIv1.0 annot-version=v1.0 MEEEQKELPNKLGKCLPVPWVQELAKDPLFAAAVPPRYIRQPHDAIVSSAVEVPVIDLRKIVCPPSTDDVADDELGRLHEACKHWGFFQLVNHGVSNALV ERVKKEIQEWFDIPMEEKKKFWQRYGDLEGFGQAFVVSEEQKLDWGDMFYITSLPTHLRRPYLFPLLPLSLRNTLEEYSAALKSLAMKILNLMAEALGMD RTDMNVLFGEEGWQQFRMNYYPPCPQPELVMGLNSHSDAVGLTILLQVTSDTPGLQVKNDGYWVPVTPLPDALIVNVGDILEIVSNGVYKSVEHRATVNS KKERISVATFLSPRLDGDLGPAPSLITPTSPTQFKRISVTDYFKGFFGRELTGKSYVDVMRIHNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011981 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011980 [exp]	1.7	0.8894
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	13.6	0.7934
AT1G04670			unknown protein		Lus10004041 [exp]	16.7	0.7934
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	19.3	0.7934
					Lus10040397 [exp]	21.6	0.7934
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10037333 [exp]	22.5	0.7766
					Lus10006918 [exp]	23.6	0.7934
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10042046 [exp]	23.8	0.6645
AT3G02645			Plant protein of unknown funct...		Lus10033668 [exp]	24.0	0.7431
					Lus10007508 [exp]	25.5	0.7934

Compare expression of checked genes

Lus10011981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.