Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 367 / 3e-126 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G25300 359 / 5e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G78550 353 / 1e-120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 349 / 3e-119 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 347 / 2e-118 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 273 / 2e-89 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 236 / 1e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 229 / 3e-72 ATJRG21 jasmonate-regulated gene 21 (.1) AT2G38240 228 / 6e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 229 / 2e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022292 [exp] 391 / 2e-135 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10011980 [exp] 378 / 2e-130 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10026173 [exp] 377 / 1e-129 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10011981 [exp] 376 / 2e-129 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10032574 [exp] 365 / 5e-125 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10015252 [exp] 363 / 2e-124 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10011979 [exp] 360 / 2e-123 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10030995 [exp] 335 / 1e-113 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10030934 [exp] 322 / 2e-108 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G025900 [exp] 513 / 0 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G382400 [exp] 407 / 3e-142 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 403 / 2e-140 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G355100 [exp] 391 / 1e-135 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G355200 [exp] 327 / 2e-110 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.009G022800 [exp] 292 / 7e-97 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023600 [exp] 277 / 8e-91 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 255 / 3e-82 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G201000 [exp] 250 / 3e-80 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 231 / 5e-73 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10011985 pacid=23161443 polypeptide=Lus10011985 locus=Lus10011985.g ID=Lus10011985.BGIv1.0 annot-version=v1.0 ATGGAATCCCCGCCGCCGTCCGTTGAACAAGTCAACTTCGGAAAATCGCTCATAGTGCCTAGCGTTCAACAGCTCGCCAAGGAATGCAAGGAAAAGATCC CGCCCAGGTACGAGAGGCCCCAAATCGAACCGCTCATCATTTCCGATAGCCAAGTTTGGACCGTTCCAGTGATTGATCTTGAAAAACTTGCTTCCAATGT TGCAACCTTGTCGGATTCCGAGTCCGATTTGAATAATCTGCACTCTGCTTGCAGAGATTGGGGATTCTTCCAGGTAGTGAATCATGGAGTTAGTACGGAA TTGTTAGATGATTTAAGGCTCGAGATTGCGAGATTCTTCCAACTCCCATACGAGGAGAAGAAGAGGAAGCAACTGTGGCAGCAGCCAGATAATCACGAGG GTTTTGGTCAACTCTTTGTGGTTTCAGAAGAGCAGAAGCTTGACTGGTCTGATATGTTCTACATTACTACTCTGCCTCGCAATCTCCGGCTGACCGAGCT TTTCGATAAGCTTCCTCTCAAGCTCAGAGAGACTTTAGAGACTTACTCTGAAGAGTTGAAAAGGCTAGCACTAAGGATATTAAGTTACATGTCAAAGGCT CTGGGAATGGATGTCCATGAAATGGAGGATATGTTCAGTGATGGAGTTCAGTCAATGAGGATGAACTACTATCCACCGTGTCCCGAACCAGACAAGGCCA TCGGATTCACTCCTCATTCTGATGCCGATGCATTGACGATCCTTTACCAGCTCAACGACACTGAAGGGCTGCAGATTCGGAAGGATGGCAAATGGGTTCC CATCAAGCCTCTTCTGAATGCTTTTGTAGTTAACATCGGCGACATCATGGAGATTATGAGCAATGGAGTGTACAGAAGCATAGAACACAGAGCAGCTGTG AATCCAACTAGTGAGAGGCTATCGGTTGCAACGTTCTACAGCTGCAAGTTAAACTGTACTTTAGGCCCTGCTACGAGCCTGGTAGGTCCGAGCAATCCGC CGGTGTTTCATCGGGTCCCTGTGGAGAAGTACTTCAAGGAGTTCTTTGCTCGGAGATTGAACGGGAAGTCTTACCTTGACTTCATGAGAATAGTTGATGA AGAATCAGAAACTCCTTCCAACTGA
AA sequence Show only first row Show all	>Lus10011985 pacid=23161443 polypeptide=Lus10011985 locus=Lus10011985.g ID=Lus10011985.BGIv1.0 annot-version=v1.0 MESPPPSVEQVNFGKSLIVPSVQQLAKECKEKIPPRYERPQIEPLIISDSQVWTVPVIDLEKLASNVATLSDSESDLNNLHSACRDWGFFQVVNHGVSTE LLDDLRLEIARFFQLPYEEKKRKQLWQQPDNHEGFGQLFVVSEEQKLDWSDMFYITTLPRNLRLTELFDKLPLKLRETLETYSEELKRLALRILSYMSKA LGMDVHEMEDMFSDGVQSMRMNYYPPCPEPDKAIGFTPHSDADALTILYQLNDTEGLQIRKDGKWVPIKPLLNAFVVNIGDIMEIMSNGVYRSIEHRAAV NPTSERLSVATFYSCKLNCTLGPATSLVGPSNPPVFHRVPVEKYFKEFFARRLNGKSYLDFMRIVDEESETPSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011985 [exp]	0	1
AT1G58030		CAT2	cationic amino acid transporte...		Lus10000215 [exp]	5.1	0.9050
AT3G03720		CAT4	cationic amino acid transporte...		Lus10005687 [exp]	7.5	0.9387
AT1G11905			B-cell receptor-associated pro...		Lus10000048 [exp]	11.9	0.9293
AT2G36780			UDP-Glycosyltransferase superf...		Lus10003322 [exp]	16.4	0.9343
AT1G68940			Armadillo/beta-catenin-like re...		Lus10013050 [exp]	17.3	0.9185
AT1G08110			lactoylglutathione lyase famil...		Lus10016138 [exp]	27.7	0.9138
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10006686 [exp]	28.4	0.9075
AT4G38980			unknown protein		Lus10035474 [exp]	33.8	0.8885
AT5G65030			unknown protein		Lus10026049 [exp]	36.7	0.9168
					Lus10041676 [exp]	37.8	0.9146

Compare expression of checked genes

Lus10011985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.