Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 262 / 4e-85 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G78550 255 / 2e-82 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 240 / 2e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17010 236 / 7e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 230 / 1e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 204 / 2e-62 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 202 / 9e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 189 / 3e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G16330 187 / 5e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G20400 187 / 6e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011987 [exp] 313 / 5e-105 AT1G78550 284 / 1e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011980 [exp] 280 / 4e-92 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011985 [exp] 268 / 5e-87 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10022292 [exp] 265 / 4e-86 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10026173 [exp] 265 / 1e-85 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10011981 [exp] 264 / 1e-85 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10011979 [exp] 261 / 1e-84 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10015252 [exp] 253 / 3e-81 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10030934 [exp] 234 / 3e-74 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355200 [exp] 331 / 5e-112 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.001G382400 [exp] 277 / 5e-91 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.009G025900 [exp] 266 / 1e-86 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G381700 [exp] 261 / 8e-85 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G355100 [exp] 254 / 7e-82 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.010G201000 [exp] 220 / 1e-68 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 216 / 6e-67 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G062500 [exp] 205 / 5e-63 AT5G20400 432 / 2e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G022800 [exp] 202 / 8e-62 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023600 [exp] 201 / 2e-61 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10011986 pacid=23161446 polypeptide=Lus10011986 locus=Lus10011986.g ID=Lus10011986.BGIv1.0 annot-version=v1.0 ATGGCAGAGTCAACCGTTACAGGCTTTGACAGATACATGAACGACGTCCAATCATTAATGCAAACCAGCGTCCAAGAGCTCGCCAAAACCACGCCGCTCT CAGTCCCACCCAGCTTCCGACAAGAAACACGTAGCACTACTATCACTCCCACCGCGGCGGATCTTCCCACCGTTGACTTCCACATGTTGGCTACTTCTGC CTCGGAGCTCGAGAAGTTACACTCTGCATGCCAGGAGTGGGGGATCTTTCAGGTGGTGAACCACGGGGTCGATCTGAAGGTGATGGAGAAGCTGAGAGGC GAGATCGAGGGGTTCTACGAGCTTTCGTTCGAAGAGAGGATGAAGTACGGAGTGAGGCTGGGAGAAGTTGAAGGCTATGGAGGAAACATGGTGAGAGCAA ACGGGAAGATGGATTGGGGAGATAGGCTATACATGACTACAAACCCTAACCATCTCAGAAGGCCACACCTTTTGCCAGAGCTCCCTTCATCCTTCAGAGA AACCTTGGAGGAGTACTTACAGAGCCTACAAGGCCTCGCCATGCAACTCCTAGGGTCGATATCGAAGGCCTTGAAGATCGACGAGCAGGAAATGGCCGGA AAACTGGACGACGGGCTACAGTCGATGAGGATCACGTACTACCCGCCCTGCCCGCAGCCGGAGATGGTGTTGGGATTCACGCCTCACTCCGACGCCACGT GCATCACCATCCTCAACCAAGTTAACGGAGTCGGAGGGCTGGAGATCAAGCAAAAGGATGACGACGGCGGCAGTTATTGGATTCCGGTGGCCTTCCGTCC CAACGCTCTTCTTGTGCTTGTCGGAGACATTCTCGAGGTTTTCAGCAACGGGGAGTATGAGAGCGTGGAGCACAGGGTGACAGTGAATCCGGATAAGGAA AGGATTTCAATGGCTTTCTTCGTCAACCCAAAACTCGACGCCGAAATCCAACCGGCTGCGACGATGAACCCACGGAAGATCAGGAGCTCGCCGCCGAGAT ACAAGAGCATCGTTATGGACCAATATGTCAAGAACTACTTCAGCCGTGTCCTCAACGGGAAGTCCAATTTAGACTATCTGAAGATTAATGTCCCTTCTGT CGACGACGATATGGCACATTGA
AA sequence Show only first row Show all	>Lus10011986 pacid=23161446 polypeptide=Lus10011986 locus=Lus10011986.g ID=Lus10011986.BGIv1.0 annot-version=v1.0 MAESTVTGFDRYMNDVQSLMQTSVQELAKTTPLSVPPSFRQETRSTTITPTAADLPTVDFHMLATSASELEKLHSACQEWGIFQVVNHGVDLKVMEKLRG EIEGFYELSFEERMKYGVRLGEVEGYGGNMVRANGKMDWGDRLYMTTNPNHLRRPHLLPELPSSFRETLEEYLQSLQGLAMQLLGSISKALKIDEQEMAG KLDDGLQSMRITYYPPCPQPEMVLGFTPHSDATCITILNQVNGVGGLEIKQKDDDGGSYWIPVAFRPNALLVLVGDILEVFSNGEYESVEHRVTVNPDKE RISMAFFVNPKLDAEIQPAATMNPRKIRSSPPRYKSIVMDQYVKNYFSRVLNGKSNLDYLKINVPSVDDDMAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011986 [exp]	0	1
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033581 [exp]	1.0	0.9800
AT1G20870			HSP20-like chaperones superfam...		Lus10007642 [exp]	1.4	0.9795
AT1G70850		MLP34	MLP-like protein 34 (.1.2.3)		Lus10002644 [exp]	1.7	0.9654
AT5G51950			Glucose-methanol-choline (GMC)...		Lus10015012 [exp]	2.2	0.9631
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033582 [exp]	3.5	0.9417
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10025903 [exp]	4.0	0.9635
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10010765 [exp]	4.5	0.9238
AT1G21360		GLTP2	glycolipid transfer protein 2 ...		Lus10028618 [exp]	8.5	0.8672
					Lus10008321 [exp]	8.7	0.8889
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10025923 [exp]	9.2	0.9186

Compare expression of checked genes

Lus10011986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.