Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78550 283 / 1e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 280 / 5e-92 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G25310 269 / 7e-88 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 268 / 2e-87 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17010 262 / 4e-85 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 255 / 3e-82 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 236 / 4e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 228 / 5e-72 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 222 / 3e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G55970 210 / 6e-65 ATJRG21 jasmonate-regulated gene 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011986 [exp] 355 / 1e-121 AT1G17020 291 / 3e-96 senescence-related gene 1 (.1) Lus10011980 [exp] 320 / 5e-108 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011981 [exp] 301 / 2e-100 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10011979 [exp] 301 / 2e-100 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10011985 [exp] 292 / 9e-97 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10015252 [exp] 286 / 2e-94 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10022292 [exp] 286 / 2e-94 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10026173 [exp] 280 / 5e-92 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10030934 [exp] 261 / 8e-85 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355200 [exp] 395 / 2e-137 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.001G382400 [exp] 311 / 1e-104 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 308 / 2e-103 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G355100 [exp] 298 / 2e-99 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.009G025900 [exp] 295 / 5e-98 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.009G022800 [exp] 249 / 2e-80 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023600 [exp] 232 / 1e-73 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 225 / 1e-70 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 223 / 6e-70 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 219 / 2e-68 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10011987 pacid=23161409 polypeptide=Lus10011987 locus=Lus10011987.g ID=Lus10011987.BGIv1.0 annot-version=v1.0 ATGACAACGACGACCACGACGTCGTTTGCCAACGGTGATGATGATCAGCTGGTTCCTCCGATGGTAAGCGTCCAAGAGCTGGCCAAACGGCCACTCACCT CAATCCCACGGCGGTTTGTTCAACATCAGCTGGTCAACGGAATAGCTCTGAGAAGTTTGGAGGCCACGGCTGCGCCGAGGGTTGACATGGGACTACTTTT GTCGGCGGATCGTAGGGTTGCGAATCTCGAACTCGAAAGGCTTCACTCTTGTTGCATGGAATGGGGTATCTTCCAGTTGGTGAACCATGGAGTGGAAATG GAGAAGCTAAGATTCCAAGTCGAAGAGTTCTACAAGCTTCCCGCAGAGGAGAAGATGAGGTTCAAAGAACGGCCGGGGGAGTATGAAGGGTACGGAGGAA CAGGAAGGTTGAAAGGAAGGCTCGAGTGGGGCGACAGGTTCTACATGAACACTAACCCTATCGTGATAAGAAAGCATCACCTCTTCCCGCAACTTCCTCC ATCATTCAAAGAGAGTCTGGAGGAGTACTTGCATGAACTTCAGAAACTGGCAATGAGACTTGTAGGGTTGATGGCGAATGCAATAAAGACAGAGAGGAAG AAGGTGGAGGAGATGATGGAGGACGGGATGCAATCGGTGAGGATGAATTACTATCCGCCTTGCCCTAGGCCAGAGCTGGTGATGGGGATAACTCCGCACT CCGATGCATCGTGCATCACGATTCTTAACCAGGTCAACGAGGTTGATGGACTGATGATTGTCAAAGATGGGAGTTGGGTTCCTTTGACTTTCCTCCCACA TGCCCTTGTTGTGAATGTTGGAGACATTTTCGAAGTTCTTAGCAATGGTATGTACAAGAGCGTAGAACATAGTGTGACAGTTAACTCAAAAAGAGAACGA ATATCTTTCAACTTCTTCTTCAACCCTAGATTCGACGCAAAAATTGAACCAGCAAGCGATATAATCACTCCCGAGAATCCACCAAAATTCAAGAGGAAGG GAATGGAACAATATGTCAAGGATTATTTCGCCATGAAGATGGATGGCAAGTCAAACTTAGAACATATGAAAATCATCAATGAGGATGACTAA
AA sequence Show only first row Show all	>Lus10011987 pacid=23161409 polypeptide=Lus10011987 locus=Lus10011987.g ID=Lus10011987.BGIv1.0 annot-version=v1.0 MTTTTTTSFANGDDDQLVPPMVSVQELAKRPLTSIPRRFVQHQLVNGIALRSLEATAAPRVDMGLLLSADRRVANLELERLHSCCMEWGIFQLVNHGVEM EKLRFQVEEFYKLPAEEKMRFKERPGEYEGYGGTGRLKGRLEWGDRFYMNTNPIVIRKHHLFPQLPPSFKESLEEYLHELQKLAMRLVGLMANAIKTERK KVEEMMEDGMQSVRMNYYPPCPRPELVMGITPHSDASCITILNQVNEVDGLMIVKDGSWVPLTFLPHALVVNVGDIFEVLSNGMYKSVEHSVTVNSKRER ISFNFFFNPRFDAKIEPASDIITPENPPKFKRKGMEQYVKDYFAMKMDGKSNLEHMKIINEDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78550			2-oxoglutarate (2OG) and Fe(II...		Lus10011987 [exp]	0	1
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10018545 [exp]	9.2	0.7487
AT4G30230			unknown protein		Lus10041416 [exp]	14.9	0.8494
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10007832 [exp]	19.0	0.7017
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10035629 [exp]	29.2	0.7738
AT3G22060			Receptor-like protein kinase-r...		Lus10012853 [exp]	30.8	0.6825
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10008383 [exp]	59.0	0.7139
AT4G37580		UNS2, COP3, HLS...	UNUSUAL SUGAR RESPONSE 2, HOOK...		Lus10002314 [exp]	74.9	0.7340
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10008579 [exp]	77.0	0.7334
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021136 [exp]	104.8	0.7133
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10010956 [exp]	106.7	0.7119

Compare expression of checked genes

Lus10011987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.