Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46550 222 / 9e-66 DNA-binding bromodomain-containing protein (.1) AT5G14270 139 / 6e-35 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT3G01770 126 / 1e-30 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G63320 124 / 1e-30 NPX1 nuclear protein X1 (.1.2.3) AT3G27260 125 / 3e-30 GTE8 global transcription factor group E8 (.1.2) AT1G06230 121 / 8e-29 GTE4 global transcription factor group E4 (.1.2.3) AT1G73150 109 / 2e-25 GTE3 global transcription factor group E3 (.1) AT1G17790 101 / 1e-22 DNA-binding bromodomain-containing protein (.1) AT5G65630 97 / 5e-21 GTE7 global transcription factor group E7 (.1) AT5G10550 92 / 3e-19 GTE2 global transcription factor group E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002784 [exp] 948 / 0 AT5G46550 241 / 3e-73 DNA-binding bromodomain-containing protein (.1) Lus10032076 [exp] 131 / 7e-32 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10014609 [exp] 130 / 2e-31 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10033623 [exp] 117 / 2e-27 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 117 / 2e-27 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 117 / 2e-27 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10020470 [exp] 97 / 9e-22 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10007096 [exp] 99 / 2e-21 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10034067 [exp] 97 / 7e-21 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355300 [exp] 395 / 1e-131 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1) Potri.011G077100 [exp] 360 / 1e-117 AT5G46550 181 / 2e-50 DNA-binding bromodomain-containing protein (.1) Potri.015G091800 [exp] 143 / 6e-36 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.001G335000 [exp] 136 / 9e-34 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.012G094300 [exp] 135 / 2e-33 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.013G118900 [exp] 122 / 3e-29 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.019G090700 [exp] 120 / 1e-28 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.011G096400 [exp] 109 / 3e-25 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.001G376400 [exp] 107 / 7e-25 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.001G285700 [exp] 101 / 1e-22 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10011989 pacid=23161434 polypeptide=Lus10011989 locus=Lus10011989.g ID=Lus10011989.BGIv1.0 annot-version=v1.0 ATGGGGTCTGCTGAGACTGTTGTGAGCAGGAAGTTTCTGAAGATTAAATTTACCTCCCAGAAAGTTGAAATTGCTCCTGCTACAAATTCATGCGGTCTTG AGGGGAAGCCTGTGGATCAGCCTTCTCATTCTCAGATTAGTGCCTCTGAAGAGTATTATGGTAAGAGTGTTGTACCTTGGTCGAAAAAACGCCGGTCGTC AGATTTAGTAGACGAACGCCCAGGGAAGAGGCGGAGAATGGACCGCACTACTTCGCAGCAGTGCTCGGCTCTGCTGAAGGTGCTTCTTGGGCATCCATAT GGTTGGATTTTTAGTAAGCCAGTGGATCCTGTCGAGCTGAATATTCCTGATTATTTCACGATTATAACCAATCCGATGGATCTTGGGACGATAAACTCCA AGCTGTCCAAGAAGAAATATTTTGGTGCCGAAGATTTTGCTGCTGATGTTAGATTGACGTTCGCCAACGCCATGCTGTATAACCCACCTAGCAACTCTGT GCACACGACAGCCCTGGAACTTCGTGATTTGTTCGAGATGAGGTGGAATTTATTGGAGGAAAAGTGGAGCCGTGAGCAAGCTAAGTATGGAACTGGGAAG TTACTGACTGAGCAGGTTAAGGAACGGAATCATGCTGAAACTCGTCCTAAGAGCTCCAAATCATCTAAAGAGAAGAGGAAAAGGATCTCTCTTGTGGCAC AAGCTGTTGAGGTTAAGCATGCCAAAGCTGCTGAAAGCTGTGCACAGAATTCACTTGAAGGTCCTGGACATGTGCATGGCCCTGTCAATGCAAAACCATC AATGAGGATAGTTGTTCGGAAATGTAGTACTTGCGGCAGGATCTCCTGCGGGTGTAGCGTTCAGATGGATTCAAGTAATGCATTATCAGATGCATCTGGT GATGGGCTGCCTAGCAGAGATCATTTACAAAGCACTGGGGTCAGGAGATTGGACTGTCCGCCAGATGTTATCTCAACATCCCAGATGAGTAGATCCGATC CAGATTCTGATGGTGCTGTGAGTGCTGCGGATGAAGATAATGTATGCCCGAGTTCGCAGCTTGCAGATCCTGCAACTGATGCAGTTTCAGTAGAAGATTG GAGATCCAATGCTGTTGAAGTACAGCAAATGTCACCCAAAAGAGCCCTACGTGCTGCAATCATAAAGGAAAGATTTGCACACACAATCCTGAAGGCAAAG CATAAAACACTTCTCGATAATGGTGAGAAGGCTGACTTAACAAAGATGCAGCAGGAGAAGGAGAGACTGCAAAGGATCCACAATGAAGAGAAGGCAAGGA TTGAAGCCCAAATTAGGAAGGCTGAAACTGCCTTACGGAGGAAAGAAGAGATGGAGTTGAAGGAGCAAAGGCAACGAGAAAGAGAAGCTGCACGAGCCGC TGTGTTGAAGATCGAGAGAAGTGTTGAAATCGAGGAAAACCGAGAGGTGTTGAAAGAACTCGAGGATATATGCGGCTGTACGTTGTTGGTTATCACCACC CCAAGAGCTGAAACAGCATACCGAGAGCTTGGAAGCCCTCTGGAGCGACTAGGCCTCTTCTTCAAGGACGAGACTGACAATGTGGATGATTTGTTAGATG GAGATGGAGATGGAGATGTCGAAGATGGTGAACTATTAGCTTGA
AA sequence Show only first row Show all	>Lus10011989 pacid=23161434 polypeptide=Lus10011989 locus=Lus10011989.g ID=Lus10011989.BGIv1.0 annot-version=v1.0 MGSAETVVSRKFLKIKFTSQKVEIAPATNSCGLEGKPVDQPSHSQISASEEYYGKSVVPWSKKRRSSDLVDERPGKRRRMDRTTSQQCSALLKVLLGHPY GWIFSKPVDPVELNIPDYFTIITNPMDLGTINSKLSKKKYFGAEDFAADVRLTFANAMLYNPPSNSVHTTALELRDLFEMRWNLLEEKWSREQAKYGTGK LLTEQVKERNHAETRPKSSKSSKEKRKRISLVAQAVEVKHAKAAESCAQNSLEGPGHVHGPVNAKPSMRIVVRKCSTCGRISCGCSVQMDSSNALSDASG DGLPSRDHLQSTGVRRLDCPPDVISTSQMSRSDPDSDGAVSAADEDNVCPSSQLADPATDAVSVEDWRSNAVEVQQMSPKRALRAAIIKERFAHTILKAK HKTLLDNGEKADLTKMQQEKERLQRIHNEEKARIEAQIRKAETALRRKEEMELKEQRQREREAARAAVLKIERSVEIEENREVLKELEDICGCTLLVITT PRAETAYRELGSPLERLGLFFKDETDNVDDLLDGDGDGDVEDGELLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46550			DNA-binding bromodomain-contai...		Lus10011989 [exp]	0	1
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	3.5	0.9283
AT5G43920			transducin family protein / WD...		Lus10011916 [exp]	4.0	0.9209
AT2G45530			RING/U-box superfamily protein...		Lus10008286 [exp]	5.2	0.9183
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	6.9	0.9082
AT3G12100			Cation efflux family protein (...		Lus10004168 [exp]	7.5	0.9086
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	7.7	0.9155
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10027994 [exp]	10.2	0.8964
AT1G15030			Protein of unknown function (D...		Lus10031598 [exp]	15.8	0.8852
AT4G03020			transducin family protein / WD...		Lus10029621 [exp]	16.5	0.8809
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026913 [exp]	18.0	0.9089

Compare expression of checked genes

Lus10011989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.