Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14770 260 / 5e-88 SWEET2, AtSWEET2 Nodulin MtN3 family protein (.1) AT1G21460 187 / 4e-59 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT5G53190 157 / 2e-47 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1) AT5G62850 152 / 8e-46 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT4G10850 145 / 7e-43 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT5G13170 139 / 8e-40 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT3G28007 135 / 1e-38 SWEET4, AtSWEET4 Nodulin MtN3 family protein (.1) AT1G66770 135 / 1e-38 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT5G40260 131 / 2e-37 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT4G15920 130 / 7e-37 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002783 [exp] 361 / 2e-126 AT3G14770 226 / 4e-73 Nodulin MtN3 family protein (.1) Lus10015245 [exp] 341 / 2e-119 AT3G14770 269 / 3e-91 Nodulin MtN3 family protein (.1) Lus10005411 [exp] 324 / 3e-113 AT3G14770 258 / 2e-87 Nodulin MtN3 family protein (.1) Lus10028634 [exp] 186 / 1e-58 AT1G21460 359 / 1e-126 Nodulin MtN3 family protein (.1) Lus10018932 [exp] 186 / 2e-58 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Lus10003200 [exp] 166 / 6e-51 AT4G10850 255 / 1e-85 Nodulin MtN3 family protein (.1) Lus10017302 [exp] 164 / 5e-50 AT4G10850 254 / 4e-85 Nodulin MtN3 family protein (.1) Lus10034880 [exp] 159 / 6e-48 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10002364 [exp] 152 / 4e-45 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355500 [exp] 294 / 2e-101 AT3G14770 231 / 2e-76 Nodulin MtN3 family protein (.1) Potri.001G383000 [exp] 267 / 8e-91 AT3G14770 251 / 1e-84 Nodulin MtN3 family protein (.1) Potri.011G103600 [exp] 266 / 2e-90 AT3G14770 232 / 7e-77 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 189 / 5e-60 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 189 / 5e-60 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1) Potri.002G072800 [exp] 189 / 5e-60 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 189 / 7e-60 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 157 / 2e-47 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Potri.003G143100 [exp] 152 / 1e-45 AT4G10850 262 / 4e-88 Nodulin MtN3 family protein (.1) Potri.015G021900 [exp] 149 / 2e-44 AT5G53190 286 / 9e-98 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10011990 pacid=23161484 polypeptide=Lus10011990 locus=Lus10011990.g ID=Lus10011990.BGIv1.0 annot-version=v1.0 ATGACCCAGATGGCGATCTTTACTGGGCTCTCTTCAATCTACTCAGTCCTCAGTGAGTCAGCTGGAGTTGCTGGAAATCTCTGTGCTTTTGTACTCTTCG TCTCACCCATACCAACGTTTAGGAGAATTATCAGGAACCAGTCGACGGAGCAGTTCTCTGGATTGCCGTACGTATACTCTCTTTTGAACTGCTTGATTTG CCTTTGGTATGGGATGCCCTTCGTTTCCCCCAATATCATACTGGTAGCCACTGTCAATTCGATTGGGGCGGTCTTCCAGTTTGTCTACATAGCCATCTTC ATTGCCTATGCTGATAAAACCAAGAAGGTGAAGATGTCGGTGTTGCTAGGTGCGGTGTTTGTGTTGTTTGCTGCAATTGCCTTTGTGAGCTTGAACTTCA TGGAGTCTCACGTCAGGCAGTTGTTCATTGGATATTTGAGCGTCTTCTCTTTGATTTCCATGTTTGCTTCCCCGCTTTTCATCATTAATCTGGTGATCAA GACTAGGAGTGTCGAATACATGCCATTCTTCCTTTCGCTTGCAACGTTCGTGATGAGCCTCTCGTTCTTGGCGTACGGAATGCTCAAGGATGATGCTTTC ATAACCGTACCGAATGGAATTGGTACGATTCTGGGGGTAGTTCAATTGGCACTGTACTACCACTACAGCAACAGATTCAGTGAAAACTCGAGAGAACCGT TGCTAGCAGAATTTGCATAA
AA sequence Show only first row Show all	>Lus10011990 pacid=23161484 polypeptide=Lus10011990 locus=Lus10011990.g ID=Lus10011990.BGIv1.0 annot-version=v1.0 MTQMAIFTGLSSIYSVLSESAGVAGNLCAFVLFVSPIPTFRRIIRNQSTEQFSGLPYVYSLLNCLICLWYGMPFVSPNIILVATVNSIGAVFQFVYIAIF IAYADKTKKVKMSVLLGAVFVLFAAIAFVSLNFMESHVRQLFIGYLSVFSLISMFASPLFIINLVIKTRSVEYMPFFLSLATFVMSLSFLAYGMLKDDAF ITVPNGIGTILGVVQLALYYHYSNRFSENSREPLLAEFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10011990 [exp]	0	1
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10010999 [exp]	2.8	0.8838
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10035934 [exp]	4.0	0.8830
AT3G59350			Protein kinase superfamily pro...		Lus10026706 [exp]	5.2	0.8672
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	7.7	0.8664
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001927 [exp]	8.7	0.8097
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	11.0	0.8569
AT5G47900			Protein of unknown function (D...		Lus10027468 [exp]	12.6	0.8011
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10038976 [exp]	15.0	0.8255
AT4G08520			SNARE-like superfamily protein...		Lus10006883 [exp]	17.4	0.8073
AT1G16240		ATSYP51, SYP51	syntaxin of plants 51 (.1.2.3)		Lus10002446 [exp]	20.4	0.7952

Compare expression of checked genes

Lus10011990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.