Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29630 622 / 0 5'-3' exonuclease family protein (.1.2.3) AT1G18090 281 / 1e-85 5'-3' exonuclease family protein (.1.2) AT5G26680 95 / 9e-21 5'-3' exonuclease family protein (.1.2) AT3G28030 72 / 2e-12 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT2G02550 55 / 1e-08 PIN domain-like family protein (.1.2) AT3G48900 50 / 5e-06 single-stranded DNA endonuclease family protein (.1.2) AT1G01880 50 / 6e-06 5'-3' exonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002782 [exp] 1219 / 0 AT1G29630 634 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10004608 [exp] 569 / 0 AT1G29630 481 / 6e-165 5'-3' exonuclease family protein (.1.2.3) Lus10027250 [exp] 274 / 2e-83 AT1G18090 495 / 1e-170 5'-3' exonuclease family protein (.1.2) Lus10038958 [exp] 164 / 8e-45 AT1G18090 315 / 5e-103 5'-3' exonuclease family protein (.1.2) Lus10000270 [exp] 81 / 4e-16 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039424 [exp] 72 / 1e-12 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10041375 [exp] 54 / 3e-07 AT1G01880 660 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10005744 [exp] 54 / 5e-07 AT3G48900 563 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10039423 [exp] 43 / 0.0006 AT3G28030 269 / 3e-82 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G077001 [exp] 715 / 0 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3) Potri.015G041400 [exp] 292 / 8e-90 AT1G18090 584 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.013G000700 [exp] 97 / 1e-21 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.017G070500 [exp] 70 / 7e-12 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Potri.014G077300 [exp] 46 / 0.0001 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0464 [flax] [poplar] 5_3_exonuc_C PF00867 [flax] [poplar] XPG_I XPG I-region CL0280 [flax] [poplar] PIN PF00752 [flax] [poplar] XPG_N XPG N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011991 pacid=23161467 polypeptide=Lus10011991 locus=Lus10011991.g ID=Lus10011991.BGIv1.0 annot-version=v1.0 ATGGGGATACAGGGGCTTTTGCCCCTTCTGAAGTCGACGATGCAATCGACCCACATTAAAGACTTACAAGGCTGTTCCGTCGCCGTTGATACTTACTCCT GGCTTCACAAAGGTGCACTTTCCTGTAGCACTCAGCTCTGCAAAGGACTACCCACTTCCAGGCACATTGAGTACTGTATGCACAGGGTGAATTTGTTGCG GCATTATGGTGTTAAACCTATTCTTGTCTTTGATGGAGGCTTTCTGCCTATGAAGCTTGAACAAGAGAACAAGCGTGCAAGGTCAAGAAAGGAAAACCTT GCTCGTGCTATTGAGCACGAGTCAAACGGGAACTCTACTGCAGCTTACGAGTGCTACCAGAAGGCTGTTGACATATCGCCTTCTATCGCACATGATCTGA TCCAGGTCTTGAAGCAGGAGAATGTGCCGTATGTTGTAGCTCCTTATGAGGCGGATGCACAGATGACATTCATGGCATTAAATAAGCAAGTGGATGCAGT TATCACCGAGGACTCGGATCTCATAGCATTTGGATGCCCTAGGATCATATTCAAAATGGACAAGTATGGGCAAGGTGTCGAGTTTCAGTTTTCCCGGCTT CAGAAAAACAAGGAACTATGTTTCGCTGGATTCACTAACCAAATGGTTTTGGAGATGTGCATTTTGAGTGGCTGTGACTATTTGCAGTCACTACCTGGAA TGGGCTTGAAAAGGGCGCACACGTTAATCTCCAAGTTTAAAACTTATGAGAAGGTAATCAAGCATTTGAAGTATAGCACGGTCTCTATTCCTCCTTTCTA TGAGGAATCATTCAAGAAAGCAATACTGACTTTCCAGCATCAACGAGTGTATGATCCTATTACTGAAGATATTGTGCATTTGTCTGACATTCCTGAAAGT CTGGATGGTGTATATTTTCTAAATCCTGAGCTGTTCCTTAACCTTTTGAATACACGGATTCCACAAGATGTGGCCAGAGGTATTGCGGCTGGCGATTTGG ATCCATTTACTCACACACCATTCCAGGAAAGCACTCCAAATTGTGTATCTGTGATTAGTGGAACTTCAAAAGTGAAGAACTCTAAACCTGAATGTATAGG CAAGAAGATAGATTTGCCGGTGCAGAAGAATCTCCTCACTAATTACTTCTCTAAGAGAAAATTTAAGACACCTCGGAAATCGCCTACATGTTCAGTTCCA GTGGATAGCTCTTGCCTGAAAGAGTTTTGCTTCGTTGGAGCTGGTTCTGGACGACTTAACTGCACTTCATCGTCTACTTCTGCCCCTGAAAATCATTCTA GCACGTCTCCCCACACTATGGTGGAAACCTTACATGAGCCAAAGTTTATGGAATCTCTAAAGGAAGAGAAAGCAAGCACAGGAGATATGCCTCTCAAAGC TTTTGTCCAGTCACTTAATCAATCCGGGCAAGCTGTACTTAAGGAATGCGAGACTAAGACCAATCAAAAGCAACGAACACAAGTAGCTGACCGCAAAAAG GTTATCGTGAGGAGCCGTTTCTTCCAACACAAGTCAACCAATGATGAAAGCCAAGAGAGTAAAGAGATGCCTCGGTCCAGTGGTGATCATTTGAGTGTGA CAAACGAAAGGGCTTACTTTGCACGAAATCCATCTCCGGATAGTTCCTTACAATGGAATGTAGACAGTCACAGAGAAGGTGAAACCACATTTCAAGACGG TGAAAAGAGTTCTAGTCAAGTAACTTTGAAAAGGAAGACTTCCCTGATTGACAATGACAGCAGAAGATCCAAGTACTTCTGCACAAATGCATCTTCCCTT GTGGAGGACAGTGGTGGTTGCACTTGGCTCGAGTCTGATGAAGAACCGACAGAGGAACGAACCGAGGGAGGGAAATTCGGAGCTAATATCAGGCATTTGG GTAGATATTCAGAGATAGCAGAGAAGTCGGTAGATAAATATGCGTCGATGCTTTCTTCGTTTAGATATTCGTCGTCGAATGGGTCTCGTGCTAGTGGTCT GAGAGCCCCTTTGAAGGACATTAAGAACACTAGTTGTACAACCAGGGTAACAACAGTTCCTGACTTCAGTGAGTTTGCTTATACGCCGAAGAACAAGGGG ACTGCTACTGCATCATCTAAGAGACGATAG
AA sequence Show only first row Show all	>Lus10011991 pacid=23161467 polypeptide=Lus10011991 locus=Lus10011991.g ID=Lus10011991.BGIv1.0 annot-version=v1.0 MGIQGLLPLLKSTMQSTHIKDLQGCSVAVDTYSWLHKGALSCSTQLCKGLPTSRHIEYCMHRVNLLRHYGVKPILVFDGGFLPMKLEQENKRARSRKENL ARAIEHESNGNSTAAYECYQKAVDISPSIAHDLIQVLKQENVPYVVAPYEADAQMTFMALNKQVDAVITEDSDLIAFGCPRIIFKMDKYGQGVEFQFSRL QKNKELCFAGFTNQMVLEMCILSGCDYLQSLPGMGLKRAHTLISKFKTYEKVIKHLKYSTVSIPPFYEESFKKAILTFQHQRVYDPITEDIVHLSDIPES LDGVYFLNPELFLNLLNTRIPQDVARGIAAGDLDPFTHTPFQESTPNCVSVISGTSKVKNSKPECIGKKIDLPVQKNLLTNYFSKRKFKTPRKSPTCSVP VDSSCLKEFCFVGAGSGRLNCTSSSTSAPENHSSTSPHTMVETLHEPKFMESLKEEKASTGDMPLKAFVQSLNQSGQAVLKECETKTNQKQRTQVADRKK VIVRSRFFQHKSTNDESQESKEMPRSSGDHLSVTNERAYFARNPSPDSSLQWNVDSHREGETTFQDGEKSSSQVTLKRKTSLIDNDSRRSKYFCTNASSL VEDSGGCTWLESDEEPTEERTEGGKFGANIRHLGRYSEIAEKSVDKYASMLSSFRYSSSNGSRASGLRAPLKDIKNTSCTTRVTTVPDFSEFAYTPKNKG TATASSKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29630			5'-3' exonuclease family prote...		Lus10011991 [exp]	0	1
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10032469 [exp]	1.4	0.9592
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10017724 [exp]	2.4	0.9347
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	5.3	0.9545
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Lus10036743 [exp]	5.7	0.9257
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10004012 [exp]	6.6	0.9459
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Lus10023442 [exp]	7.1	0.8845
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10042967 [exp]	7.1	0.9279
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10020576 [exp]	8.7	0.9355
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	8.7	0.9479
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10012889 [exp]	13.3	0.9302

Compare expression of checked genes

Lus10011991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.