Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29640 85 / 3e-22 Protein of unknown function, DUF584 (.1) AT2G34340 85 / 3e-22 Protein of unknown function, DUF584 (.1) AT4G18980 72 / 2e-17 AtS40-3 AtS40-3 (.1) AT5G45630 72 / 2e-17 Protein of unknown function, DUF584 (.1) AT4G04630 62 / 5e-13 Protein of unknown function, DUF584 (.1) AT4G21970 61 / 6e-13 Protein of unknown function, DUF584 (.1) AT3G15040 56 / 3e-10 Protein of unknown function, DUF584 (.1) AT3G45210 53 / 9e-10 Protein of unknown function, DUF584 (.1) AT2G28400 49 / 3e-08 Protein of unknown function, DUF584 (.1) AT5G60680 47 / 2e-07 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002781 [exp] 162 / 5e-53 AT1G29640 103 / 3e-29 Protein of unknown function, DUF584 (.1) Lus10006781 [exp] 64 / 2e-13 AT4G21970 128 / 6e-38 Protein of unknown function, DUF584 (.1) Lus10020043 [exp] 63 / 3e-13 AT4G21970 127 / 1e-37 Protein of unknown function, DUF584 (.1) Lus10034190 [exp] 62 / 9e-13 AT3G15040 125 / 9e-36 Protein of unknown function, DUF584 (.1) Lus10021536 [exp] 60 / 4e-12 AT4G21970 102 / 1e-27 Protein of unknown function, DUF584 (.1) Lus10040067 [exp] 59 / 1e-11 AT4G21970 98 / 2e-25 Protein of unknown function, DUF584 (.1) Lus10021474 [exp] 54 / 9e-10 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1) Lus10004207 [exp] 54 / 1e-09 AT3G15040 110 / 1e-29 Protein of unknown function, DUF584 (.1) Lus10000724 [exp] 53 / 1e-09 AT3G45210 111 / 1e-31 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076900 [exp] 93 / 1e-25 AT1G29640 90 / 4e-24 Protein of unknown function, DUF584 (.1) Potri.004G014000 [exp] 65 / 6e-14 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 64 / 8e-14 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.016G076300 [exp] 59 / 9e-12 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.009G014100 [exp] 54 / 8e-10 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 53 / 1e-09 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 52 / 4e-09 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 51 / 6e-09 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 49 / 6e-08 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 45 / 1e-06 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10011993 pacid=23161424 polypeptide=Lus10011993 locus=Lus10011993.g ID=Lus10011993.BGIv1.0 annot-version=v1.0 ATGTCGGCAGAAGAGCTCCACGAATCCGATATCATCTTCCCCTGCCGGGAAACGACGGCACCGGATCACCAACATCACAACACTCACCGGTCGAAGAAGA AAAGGAAGCAGAAGAGTTCGGTCCCGGTTAACATCCCGAGGAACAATGTGTTCCGGTTTGGAGATTCCGAGGAGGAGTACGAAGATTCCGACGAGTTGGT CCCTCCCCACGTGATACTCGGGAGGAGGGTCGCCGGGAAAATGGCGTTCTCCGTTTGTACAGGGAACGGGAGGACGTTAAAAGGAAGGGATTTGAGCCAA GTCAGGAATTCGATTCTTAGGATGACGGGCTTCTTAGAGACGTGA
AA sequence Show only first row Show all	>Lus10011993 pacid=23161424 polypeptide=Lus10011993 locus=Lus10011993.g ID=Lus10011993.BGIv1.0 annot-version=v1.0 MSAEELHESDIIFPCRETTAPDHQHHNTHRSKKKRKQKSSVPVNIPRNNVFRFGDSEEEYEDSDELVPPHVILGRRVAGKMAFSVCTGNGRTLKGRDLSQ VRNSILRMTGFLET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29640			Protein of unknown function, D...		Lus10011993 [exp]	0	1
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10040121 [exp]	3.7	0.7988
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Lus10003492 [exp]	13.2	0.8161
AT5G14360			Ubiquitin-like superfamily pro...		Lus10014884 [exp]	14.6	0.8115
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10009481 [exp]	16.0	0.8187
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10026617 [exp]	19.9	0.7592
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	22.1	0.8108
AT5G15240			Transmembrane amino acid trans...		Lus10030683 [exp]	28.1	0.7604
					Lus10030905 [exp]	38.9	0.8033
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10022915 [exp]	49.9	0.7680
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10002206 [exp]	50.8	0.6984

Compare expression of checked genes

Lus10011993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.