Plant FIBer expression Database

Lus10011995 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018992
[exp]
85 / 1e-18 AT3G13050 464 / 2e-160 nicotinate transporter, Major facilitator superfamily protein (.1)
Lus10021403
[exp]
0 / 1 AT2G27950 470 / 5e-154 Ring/U-Box superfamily protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10011995 pacid=23161408 polypeptide=Lus10011995 locus=Lus10011995.g ID=Lus10011995.BGIv1.0 annot-version=v1.0
ATGGGTCATTGGGAGATGGGTTCTTGCAAGAAGAGTACTACTAGGACGGTAAATAGGGAGAGTACTACTAGGACGGTCTATGTATCTGCTACTGAGTCTG
TAATCAACATGATGAAACCGAGTCTCGAGAATGGCTTCACGAAGACGGTGCCTTTGAGGAAGCTGTGCATTAGTGCATACTTGGTTGGAAGAAGAAGTAG
AAGAGCCTTCTTTCAGGATACTGCTCAAGTTGGTAGTAGAATCGATCCCTTTTATTTTAAGAGTTTTGCGGCTGCAATTTTGGAGAAGGAGGAGATGGGT
TCCAGCTACTCCTGCTGGCATACGCAACGCAGGGATGGGTTCCTTCGTCGAAGCTATGGAAATGATGATCCTCTCATTCGTGGGTCCTGCTCTCAAGTCA
CAGTGGGACCTTTCTTCCAGCCAAGAGAGCCTCTTGACCTCCGTCGTCTTCGCCAGAATGTTGATCGGAGCTTATTCTTGGGGCTTCGTTGCCGATTCCT
ATGGCAGAAGGCAAGCCACTATATAAAAACTCTCCTCCCTCGATCTTTTCTGAATTTTGCCAGGTACAAGCAACCCCTAAATCGAGCCAGTTGCATAGAT
GGTGGGATGATCGGAGGAAGCTCTGTAGGATGCAAGAGACTTGATGTCGGCGGCTTAGTTAGATGGGGCTTAGGGTTCACAATGGCTCGCTTATTTTGGT
TTTTGTACGGAAAACAATTGGGCAATTAG
AA sequence
>Lus10011995 pacid=23161408 polypeptide=Lus10011995 locus=Lus10011995.g ID=Lus10011995.BGIv1.0 annot-version=v1.0
MGHWEMGSCKKSTTRTVNRESTTRTVYVSATESVINMMKPSLENGFTKTVPLRKLCISAYLVGRRSRRAFFQDTAQVGSRIDPFYFKSFAAAILEKEEMG
SSYSCWHTQRRDGFLRRSYGNDDPLIRGSCSQVTVGPFFQPREPLDLRRLRQNVDRSLFLGLRCRFLWQKASHYIKTLLPRSFLNFARYKQPLNRASCID
GGMIGGSSVGCKRLDVGGLVRWGLGFTMARLFWFLYGKQLGN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10011995
[exp]
0 1
AT1G74920 ALDH10A8 aldehyde dehydrogenase 10A8 (.... Lus10004239
[exp]
5.2 0.9240
Lus10014719
[exp]
10.0 0.9186
AT2G44840 AP2_ERF ATERF13, EREBP ethylene-responsive element bi... Lus10029333
[exp]
12.0 0.8809
AT5G50230 Transducin/WD40 repeat-like su... Lus10015925
[exp]
12.6 0.9114
AT1G31710 Copper amine oxidase family pr... Lus10010540
[exp]
13.2 0.9185
AT1G01180 S-adenosyl-L-methionine-depend... Lus10030709
[exp]
16.6 0.9038
AT5G43745 Protein of unknown function (D... Lus10039407
[exp]
19.3 0.8958
AT4G12310 CYP706A5 "cytochrome P450, family 706, ... Lus10032210
[exp]
19.3 0.9026
AT5G15430 Plant calmodulin-binding prote... Lus10000209
[exp]
19.8 0.9021
AT3G19760 EIF4A-III eukaryotic initiation factor 4... Lus10040975
[exp]
25.0 0.8981

Lus10011995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.