Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 439 / 2e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 434 / 2e-152 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29660 423 / 4e-148 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 347 / 4e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 304 / 5e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 297 / 3e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G15720 295 / 1e-97 GLIP7 GDSL-motif lipase 7 (.1) AT1G71250 280 / 7e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 255 / 2e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011997 [exp] 478 / 3e-169 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 473 / 2e-167 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 444 / 2e-156 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 440 / 9e-155 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 426 / 4e-149 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002779 [exp] 370 / 4e-129 AT1G29660 235 / 2e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005413 [exp] 345 / 9e-118 AT1G29670 399 / 3e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000893 [exp] 328 / 2e-110 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015242 [exp] 319 / 7e-108 AT5G45670 369 / 7e-128 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G064500 [exp] 461 / 6e-163 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 456 / 5e-161 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 341 / 1e-115 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102400 [exp] 335 / 3e-113 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 323 / 8e-109 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 322 / 4e-108 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G005402 [exp] 321 / 5e-108 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 320 / 1e-107 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 320 / 2e-107 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 318 / 1e-106 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10011996 pacid=23161453 polypeptide=Lus10011996 locus=Lus10011996.g ID=Lus10011996.BGIv1.0 annot-version=v1.0 ATGACACCCGGATACGTGGCATCATTTCTGCTGACCAATGTTTGGCTTCACGCTGTAGTGTTTCTGCAGGAACATCATCTCAGTTTCGCCGCCGCTAATC CACGTCAGCAAGTTCCCTGCTACTTCATCTTCGGCGACTCTCTGGCCGACAACGGCAACAACAACCAACTCCCCTCGTTCGCCAGAGCTAATTACCCTCC TTACGGGATCGACTTCCCAACCGTACCCACAGGCCGGTTCTCTAACGGCAAAACCATTGTGGATGTCATTGCAGAGTTATTAGGATTCAATGGTTATTAC ATTCTTCCATACAATATTGCTATCAACGAGGATCAGGATAACAAAAGCATACTAAAAGGAGTGAACTATGCTTCTGGAGCTGCCGGGATTCGAGACGAAA CAGGGCGCCACCTGGGAGCTAGAGTCAGCTTCAGTTGCCAGGTCAGCAACTATCAGGACACGGTGTCAAAGATCATTGACCTTCTAGGTGGCGATGATGT GGCGGCGGCTAAGCACTTGAGCAAGTGTATTTACTCGATTGGATTAGGGAGTAATGATTATTTGAATAATTACTTCATGCCTCTGTTTTACTCCACCGCA TTGGAGTTCACTCCTGAGGAGTATGCTGATGATTTTATTAGGATTTACACTAATCAGCTCCAGATTATGTACAAGTATGGAGCGAGGAAGTTTGTGTTGT ATGGGTTGGGACCGATCGGTTGCAGCCCGAGTTCACTGATTGAAAATGGCGTTGACAGATCAACTTGTATCAACCGGATCAACTTTGCTAACCAGATCTT CAATCACAAGCTCCAATCGCTAGTTGACCGGCTCAATCAATATCATAACATGTCTGATGCCAAATTCATCTTCATCAACTCCTATGGGATATTCATGGAA CTCATTGACAACCCAGTTGCTCATGAGTTTGAAGAGACTAGAGAAGCTTGTTGTGGAGTAGGGAAGAACAACGGTCAAATTACATGTCTGCCATTCCAGA ATCCGTGTGAGAACAGGATTCGATATTTATTTTGGGATGCTTTTCATCCGACTGAAGCAGCCAATGTGATTATAGGGAGGAAGTCTTACAACTCTCGATC TCCTTCTGATTCTTATCCATTTGATATTCGCCGGCTCGCTCAGCTCTAA
AA sequence Show only first row Show all	>Lus10011996 pacid=23161453 polypeptide=Lus10011996 locus=Lus10011996.g ID=Lus10011996.BGIv1.0 annot-version=v1.0 MTPGYVASFLLTNVWLHAVVFLQEHHLSFAAANPRQQVPCYFIFGDSLADNGNNNQLPSFARANYPPYGIDFPTVPTGRFSNGKTIVDVIAELLGFNGYY ILPYNIAINEDQDNKSILKGVNYASGAAGIRDETGRHLGARVSFSCQVSNYQDTVSKIIDLLGGDDVAAAKHLSKCIYSIGLGSNDYLNNYFMPLFYSTA LEFTPEEYADDFIRIYTNQLQIMYKYGARKFVLYGLGPIGCSPSSLIENGVDRSTCINRINFANQIFNHKLQSLVDRLNQYHNMSDAKFIFINSYGIFME LIDNPVAHEFEETREACCGVGKNNGQITCLPFQNPCENRIRYLFWDAFHPTEAANVIIGRKSYNSRSPSDSYPFDIRRLAQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10011996 [exp]	0	1

Compare expression of checked genes

Lus10011996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.