Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45670 552 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 546 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29670 526 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 497 / 2e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 374 / 9e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 347 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G08460 331 / 1e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 316 / 5e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 307 / 1e-102 GLIP7 GDSL-motif lipase 7 (.1) AT2G19010 294 / 9e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002777 [exp] 715 / 0 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 529 / 0 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 526 / 0 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 489 / 5e-174 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 476 / 7e-169 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005413 [exp] 444 / 6e-157 AT1G29670 399 / 3e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015242 [exp] 386 / 3e-134 AT5G45670 369 / 7e-128 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 358 / 4e-122 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10000893 [exp] 353 / 9e-121 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076500 [exp] 568 / 0 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 566 / 0 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 377 / 8e-130 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 371 / 9e-128 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102400 [exp] 369 / 6e-127 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 365 / 3e-125 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 363 / 8e-125 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 361 / 5e-124 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 361 / 5e-124 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 361 / 8e-124 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10011997 pacid=23161472 polypeptide=Lus10011997 locus=Lus10011997.g ID=Lus10011997.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCATCCATATCTGTGAAATCCCCATTTACCACTTGGGTGGCGGCACTAGCAACAGTCGTTTTAGCTCTGTACTTGAGCCTTATTGCCAATG CGCAACAAGTACCGTGCTACTTCATATTCGGGGACTCGCTGGTCGACAATGGCAACAACAACCAGCTCCAGTCTCTAGCTAGAGCCGACTACTTGCCCTA CGGGATCGACTTCCAGGGCGGCCCTTCCGGCCGCTTCTCCAACGGCAAAACCACCGTCGATGTCATCGCCGAGCAGCTAGGATTCGACGACTACATCCCA CCATACGTCGAAGCCAGAGGCCAATCAATCCTCAGAGGCATAAACTACGCCTCAGCCGCAGCCGGAATCCGAGAAGAAACCGGACGACAACTCGGCGGAA GAATCAGCTTCAGCGGCCAAGTGAAAAACTACGTAACAACAGTCTCTCAAATCGTTGAGTTACTCGGAGACGAAGACTCCGCCGCCAACCATCTAAGCCA ATGCATCTACTCGATCGGATTAGGAAGCAACGACTACTTGAACAACTACTTCATGCCTCAGTTCTACAACACCGGCAGCCAGTTCACCCCCGAGCAGTAC GCCGACGACCTCATCGACAAGTACACCCAGCAGCTCCAGATCATGTACGACAATGGTGCTAGAAAGTTTGTTATCATCGGTATCGGTCAGATCGGGTGCA GCCCCAGCGAGCTCGCGCAGAGCAGCCCCGACGGCAAGACTTGCGTGCAGAGGATTAATTCTGCCAACACCATTTTTAACAACAAGCTTCGAGCTTTAGT TGACCAGTTCAATGGAAATACCCCTGATGCGAAGTTTATTTACATCAATGCCTATGGAATCTTTCAGGACTTGATCAACAACCCTGCTGCTTTCGGGTTT AGAGTTACAAACGCTGGATGCTGTGGAATAGGGAGAAACAACGGACAGATTACGTGCTTGCCGTATCAGACGCCGTGTCAGAATCGGGACGAGCATTTGT TTTGGGATGCTTTCCATCCGACGGAAGCTGCAAATATCGTGATCGGACGGAGGTCTTACAGCGCTGAGTCGCCGTCGGATGCTCATCCGTATGACATTCG ACGGCTTGCTCAAGTTTGA
AA sequence Show only first row Show all	>Lus10011997 pacid=23161472 polypeptide=Lus10011997 locus=Lus10011997.g ID=Lus10011997.BGIv1.0 annot-version=v1.0 MAAASISVKSPFTTWVAALATVVLALYLSLIANAQQVPCYFIFGDSLVDNGNNNQLQSLARADYLPYGIDFQGGPSGRFSNGKTTVDVIAEQLGFDDYIP PYVEARGQSILRGINYASAAAGIREETGRQLGGRISFSGQVKNYVTTVSQIVELLGDEDSAANHLSQCIYSIGLGSNDYLNNYFMPQFYNTGSQFTPEQY ADDLIDKYTQQLQIMYDNGARKFVIIGIGQIGCSPSELAQSSPDGKTCVQRINSANTIFNNKLRALVDQFNGNTPDAKFIYINAYGIFQDLINNPAAFGF RVTNAGCCGIGRNNGQITCLPYQTPCQNRDEHLFWDAFHPTEAANIVIGRRSYSAESPSDAHPYDIRRLAQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011997 [exp]	0	1
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10028893 [exp]	1.4	0.9804
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10026008 [exp]	2.0	0.9764
AT1G26945	bHLH	KDR, PRE6	KIDARI, basic helix-loop-helix...		Lus10036732 [exp]	2.4	0.9783
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10010841 [exp]	2.4	0.9755
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10003717 [exp]	3.0	0.9772
AT1G22690			Gibberellin-regulated family p...		Lus10009421 [exp]	4.5	0.9756
AT3G59090			unknown protein		Lus10040880 [exp]	6.3	0.9654
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10002421 [exp]	8.0	0.9614
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10006413 [exp]	8.1	0.9590
AT3G54940			Papain family cysteine proteas...		Lus10038684 [exp]	18.4	0.9400

Compare expression of checked genes

Lus10011997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.