Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45670 323 / 9e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 322 / 2e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29670 310 / 6e-104 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 309 / 3e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 292 / 1e-96 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 264 / 4e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 255 / 2e-82 SGNH hydrolase-type esterase superfamily protein (.1) AT2G19050 254 / 5e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 255 / 6e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71250 245 / 3e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002774 [exp] 686 / 0 AT5G45670 328 / 1e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015241 [exp] 477 / 3e-169 AT5G45670 315 / 1e-105 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005414 [exp] 477 / 5e-169 AT5G45670 315 / 2e-105 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 336 / 1e-113 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 331 / 7e-112 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 328 / 7e-111 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 327 / 5e-110 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 314 / 2e-105 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 310 / 1e-103 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G008402 [exp] 379 / 9e-131 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 377 / 3e-130 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 370 / 3e-127 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 369 / 4e-127 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 369 / 5e-127 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 368 / 1e-126 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005400 [exp] 365 / 3e-125 AT1G29670 336 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008100 [exp] 351 / 6e-120 AT1G29670 356 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 351 / 6e-120 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008300 [exp] 344 / 3e-117 AT1G29670 318 / 6e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10011999 pacid=23161441 polypeptide=Lus10011999 locus=Lus10011999.g ID=Lus10011999.BGIv1.0 annot-version=v1.0 ATGGAGATCCGGATAGTAACTATTACGACGGTAGTGGTGGTCGCCGCCTTGCTCCCGGTGGTTCGGTCGGCACCGCAGCAGGTGCCCTGTTTCTTCATCT TCGGGGACTCGCTGAATGACTGCGGCAATAACAACGACCTTGACACGGTGGCCAAAGCCAATTACAAGCCTTACGGGATCGATTACCCCGGCGGCCCCAC CGGCAGATTCACCAACGGCAAGACCATCGTTGATTTCCTCGCTGAGGATTTGGGATTTGATAAACCGATCTCGCCGTTCACAACCGCAAAAGGTGATGAT ATACTCCGAGGAGTCAATTACGCTTCAGGTTCCGCCGGAATCCTCGACGACTCCGGCAGCCATCTGGGCCGCAATGTGCCATTGGGGAAGCAAGTGGATA ACCACAAGGTAACCTTCACCAAGATAGCGGCAATGAAGGGGAACAACGAATCAGCCACAGCGCATTTGAATACTTGCTTGTACTACATGGGAATCGGAAG CAACGACTACCTCAACAACTACTTTGTGCCGGATCATTACGATTCTGGCAAACGGTTTACAGTTTTAGCCTTCGCCACTCAACTTGTCTCCGTCTACAAT GAAAAAATCAGGACTTTGTACCAGTACGGGGCGAGGAAGATTGTGGTGGTTGGGTTGGGTAAAATCGGGTGCGTCCCTTACACAATGAAGTTGTTTGGTA CAAATGGCATGAACTGCGTCGAGAGCTCGAACTCGGCTGCTAAGGCCTTCAACATGCAGCTTCAGAAGCTCGTCGTTCGGCTTAACCTCGAGATTAAAGA CGCCAAGTTCATCTTTGTCAACACTTTTGGGATGGGTGACGGCGATCCGAAACTTCTAGGTTTCGAGGTGATGAACAAAGGATGTTGCGAATCTAGGGCC GACGGGCAATGCGCAGAGGGCCAAGTCCCTTGTGGAAACAGAGGAAAGTACATTTTCTGGGACTCGTTCCATCCGACCGAGCCTCTAAACAAGGCGACGG CAGCCAGGACTTACAAATCCTTCACCCCTACGGATAACGACCCATTTGACATCCAAAGTTTGGTCACGCTAAACATAGGCAAGCTCCTTCAAGCAATATA CCTATACACATGA
AA sequence Show only first row Show all	>Lus10011999 pacid=23161441 polypeptide=Lus10011999 locus=Lus10011999.g ID=Lus10011999.BGIv1.0 annot-version=v1.0 MEIRIVTITTVVVVAALLPVVRSAPQQVPCFFIFGDSLNDCGNNNDLDTVAKANYKPYGIDYPGGPTGRFTNGKTIVDFLAEDLGFDKPISPFTTAKGDD ILRGVNYASGSAGILDDSGSHLGRNVPLGKQVDNHKVTFTKIAAMKGNNESATAHLNTCLYYMGIGSNDYLNNYFVPDHYDSGKRFTVLAFATQLVSVYN EKIRTLYQYGARKIVVVGLGKIGCVPYTMKLFGTNGMNCVESSNSAAKAFNMQLQKLVVRLNLEIKDAKFIFVNTFGMGDGDPKLLGFEVMNKGCCESRA DGQCAEGQVPCGNRGKYIFWDSFHPTEPLNKATAARTYKSFTPTDNDPFDIQSLVTLNIGKLLQAIYLYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	0	1
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	1.7	0.9854
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	2.4	0.9854
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	3.0	0.9753
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	4.5	0.9672
					Lus10011637 [exp]	4.5	0.9657
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	5.7	0.9543
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	5.9	0.9587
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	6.0	0.9627
AT4G00350			MATE efflux family protein (.1...		Lus10036374 [exp]	6.6	0.9433
					Lus10034069 [exp]	6.7	0.9494

Compare expression of checked genes

Lus10011999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.