Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 105 / 2e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19050 99 / 4e-25 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 98 / 2e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G45670 97 / 2e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 92 / 7e-23 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G37690 93 / 1e-22 SGNH hydrolase-type esterase superfamily protein (.1) AT2G19060 92 / 2e-22 SGNH hydrolase-type esterase superfamily protein (.1) AT1G29660 91 / 1e-21 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G30140 88 / 6e-21 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 87 / 2e-20 GLIP7 GDSL-motif lipase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000136 [exp] 370 / 1e-132 AT1G29670 105 / 8e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002773 [exp] 263 / 2e-88 AT5G45670 283 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012002 [exp] 190 / 8e-60 AT5G45670 295 / 5e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029281 [exp] 187 / 8e-59 AT1G29670 270 / 3e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012001 [exp] 175 / 3e-55 AT1G29670 103 / 1e-25 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029280 [exp] 176 / 2e-54 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002772 [exp] 176 / 3e-54 AT1G29670 275 / 4e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002770 [exp] 171 / 6e-51 AT1G29670 307 / 2e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10009455 [exp] 115 / 2e-31 AT1G71691 232 / 2e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G008100 [exp] 105 / 2e-27 AT1G29670 345 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 104 / 7e-27 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 100 / 2e-25 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G060700 [exp] 100 / 2e-25 AT1G29660 306 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 99 / 7e-25 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 97 / 3e-24 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 97 / 3e-24 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 97 / 3e-24 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008404 [exp] 97 / 4e-24 AT1G29670 281 / 5e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.003G213700 [exp] 96 / 1e-23 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10012000 pacid=23161496 polypeptide=Lus10012000 locus=Lus10012000.g ID=Lus10012000.BGIv1.0 annot-version=v1.0 ATGGGGTTTGAAAGCTTCATCCCACCTTTTGCGTCCAATCCTAACATATCGGAGTTACTCGTCGGAGTAAATTATGCATTGGCGTCGGCCGGAATTCTAG TGAAAAGTGGGAAACAAGGGAGGATGTACAAGTTGGGAGCAAGGAAGGTCGGGTTAGTTGGGGTGTCATCGGTGGGGTGCACCCCAGGTGCAATTGCATT AGTCGGTAGGACAAATGGCTCACTATGTGCCGAGTCAATGAACCAATTAGTGACCCCGTTCAACGACCGCCTTGGTTCGCTTATTGATCAGTTCAACGTC AATTTTCCTGATGCGAAATTCGTGTACCTGAACTCCACATTTGCTAACCAACTTGCCATCCAAGGATTCAAAGTCAAAACGGCGCCGTGTTGCAAAGTGA GTTCTGTTACAGGATTGTGCATCATGAACTCCGCTACGTGCAAGGCGAGACGGTCACATTTTTTCTCGGACGCATTCCATCCGTCCGAATCTTCGAACCG GCTCGTCGCATATTTTTTCTATCAAGCTATCAAATCGATCTTGTGA
AA sequence Show only first row Show all	>Lus10012000 pacid=23161496 polypeptide=Lus10012000 locus=Lus10012000.g ID=Lus10012000.BGIv1.0 annot-version=v1.0 MGFESFIPPFASNPNISELLVGVNYALASAGILVKSGKQGRMYKLGARKVGLVGVSSVGCTPGAIALVGRTNGSLCAESMNQLVTPFNDRLGSLIDQFNV NFPDAKFVYLNSTFANQLAIQGFKVKTAPCCKVSSVTGLCIMNSATCKARRSHFFSDAFHPSESSNRLVAYFFYQAIKSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10012000 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10000136 [exp]	1.0	0.8094
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10025549 [exp]	10.7	0.6437
AT4G18690			unknown protein		Lus10015276 [exp]	11.7	0.7000
AT2G33030		AtRLP25	receptor like protein 25 (.1)		Lus10003462 [exp]	11.8	0.6967
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Lus10009290 [exp]	14.1	0.6957
					Lus10042733 [exp]	19.5	0.6474
					Lus10029656 [exp]	20.6	0.7289
AT1G72200			RING/U-box superfamily protein...		Lus10041134 [exp]	29.6	0.6489
AT1G67785			unknown protein		Lus10018082 [exp]	53.0	0.6034
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10030588 [exp]	72.0	0.5934

Compare expression of checked genes

Lus10012000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.