Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19050 101 / 5e-25 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 97 / 2e-23 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 97 / 3e-23 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 96 / 5e-23 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 94 / 4e-22 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 94 / 4e-22 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71691 92 / 6e-22 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT4G30140 93 / 8e-22 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 92 / 2e-21 GLIP7 GDSL-motif lipase 7 (.1) AT1G33811 91 / 7e-21 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002772 [exp] 259 / 2e-85 AT1G29670 275 / 4e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029281 [exp] 204 / 3e-64 AT1G29670 270 / 3e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012002 [exp] 183 / 6e-56 AT5G45670 295 / 5e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000136 [exp] 176 / 4e-55 AT1G29670 105 / 8e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012000 [exp] 175 / 6e-55 AT1G29670 105 / 3e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029280 [exp] 171 / 1e-51 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002770 [exp] 173 / 1e-50 AT1G29670 307 / 2e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002773 [exp] 165 / 5e-49 AT5G45670 283 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015242 [exp] 149 / 3e-43 AT5G45670 369 / 7e-128 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G060700 [exp] 116 / 6e-31 AT1G29660 306 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008904 [exp] 114 / 1e-30 AT4G18970 246 / 3e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G008406 [exp] 115 / 5e-30 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 115 / 6e-30 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 114 / 8e-30 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 114 / 9e-30 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 114 / 9e-30 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008100 [exp] 114 / 1e-29 AT1G29670 356 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 113 / 2e-29 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008300 [exp] 112 / 5e-29 AT1G29670 318 / 6e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10012001 pacid=23161422 polypeptide=Lus10012001 locus=Lus10012001.g ID=Lus10012001.BGIv1.0 annot-version=v1.0 ATGGGAACGCCTTCAATTTTGAGGACGGCGTCGTTTCCTTTATGGTTCACTATTGTTGTAGCAACGGTAGCCTTCGCCGCCGTTGGAGTATCGCAGTCGC CGGAAGTGCTGTGCTACTTCATATTCGGAGACTCTATATTCGACAGTGGGAATAACAACAATCTCGCCACCTCCATGAAGGCCAACTACCTTCCTTATGG CACAGATTTTCCGACCGGCCCAACCGGGCGGTTCACCAATGGACAAACCACAGCTGATATACTTGGTAAACTCTTGGGATTTGACAGCTTCATCCCATCT TTTGCTTCAAAGCCTAACCGATCAGAGCTGTTCGTCGGATGTTTGTACAACTTGGGAGCAAGGAAGGTTGCGTTGGCCGGAGTTTTGCCCACAGGCTGCA CCCCAAGTGCCATTGCAACCGCGGGCGGGACTAATGGCTCGCTCTATGTTGACTCACTTAACCAGCTAGTGGCACCATTCAACTCGCGCATACGACTGCT TGTTGACCGGCTCAACGTTGACTTCCCTGACGCAAAATTTGTGTACCTAGATTCCACGTCAGCTAGCCAAGCGCTTGGGATTAAAACGTCGCCGTGCCGT CAAGCCCGTTCGACAGATGGTTTGTGCATTCCGAATTCAATTCCATACCCAGTTTCGGTTAGACAATCGTATTTGTTTTGGGACGCACTCCACCCAACCG AAGCAGCGAATCGGGTTGTGGCACCAGCTTTTTATCAGACTATCAAACCGATCTTGTAA
AA sequence Show only first row Show all	>Lus10012001 pacid=23161422 polypeptide=Lus10012001 locus=Lus10012001.g ID=Lus10012001.BGIv1.0 annot-version=v1.0 MGTPSILRTASFPLWFTIVVATVAFAAVGVSQSPEVLCYFIFGDSIFDSGNNNNLATSMKANYLPYGTDFPTGPTGRFTNGQTTADILGKLLGFDSFIPS FASKPNRSELFVGCLYNLGARKVALAGVLPTGCTPSAIATAGGTNGSLYVDSLNQLVAPFNSRIRLLVDRLNVDFPDAKFVYLDSTSASQALGIKTSPCR QARSTDGLCIPNSIPYPVSVRQSYLFWDALHPTEAANRVVAPAFYQTIKPIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10012001 [exp]	0	1
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10034969 [exp]	1.0	0.8966
AT5G01750			Protein of unknown function (D...		Lus10014154 [exp]	1.7	0.8000
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006971 [exp]	2.0	0.8570
					Lus10010245 [exp]	3.5	0.7720
AT3G49070			Protein of unknown function (D...		Lus10018879 [exp]	5.9	0.7694
AT3G05060			NOP56-like pre RNA processing ...		Lus10007265 [exp]	6.3	0.7601
AT5G62840			Phosphoglycerate mutase family...		Lus10030165 [exp]	6.7	0.7602
					Lus10018846 [exp]	10.2	0.7951
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10035218 [exp]	13.0	0.6819
AT4G02250			Plant invertase/pectin methyle...		Lus10001464 [exp]	13.6	0.7677

Compare expression of checked genes

Lus10012001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.