Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 290 / 5e-96 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 286 / 9e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 284 / 7e-94 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29660 282 / 5e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19050 266 / 4e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 253 / 4e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 250 / 7e-81 SGNH hydrolase-type esterase superfamily protein (.1) AT4G30140 249 / 2e-80 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 244 / 4e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 233 / 8e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029281 [exp] 492 / 8e-176 AT1G29670 270 / 3e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029280 [exp] 483 / 2e-172 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002770 [exp] 484 / 2e-170 AT1G29670 307 / 2e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002773 [exp] 473 / 3e-168 AT5G45670 283 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002772 [exp] 460 / 5e-163 AT1G29670 275 / 4e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 305 / 3e-102 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 305 / 5e-102 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 291 / 2e-96 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 288 / 2e-95 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G008100 [exp] 321 / 2e-108 AT1G29670 345 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 315 / 5e-106 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 315 / 6e-106 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 313 / 1e-105 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 313 / 3e-105 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 312 / 4e-105 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 311 / 1e-104 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005400 [exp] 308 / 1e-103 AT1G29670 336 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.003G213700 [exp] 305 / 5e-102 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G060700 [exp] 300 / 1e-100 AT1G29660 306 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10012002 pacid=23161406 polypeptide=Lus10012002 locus=Lus10012002.g ID=Lus10012002.BGIv1.0 annot-version=v1.0 ATGGAAAGGCCGTCGGAGTCACCTTCGTTGGCCTTATTGATAATTGTTGTTGTATTGGTAGCTGCCTCCGCCGATGGAGCACCTGAAGTGCCGTGCTACT TTATATTCGGAGACTCTCTATTCGACAATGGAAACAACAACAATCTCGACACGTCGACGAAATCCAATTACCCACCTTACGGCATTGCCTTCCCTGCCGG CCCAACCGGACGGTTCACCAACGGTCGAACCACGGCCGATATAGTTGGTGAACTCATGGGATTCGAAAGCTTCATCCCATCTTTCGCGTCGAATCCTAGT CGATCGGAGTTGCTTGTAGGAGTAAACTATGCATCTGCCTCGGCTGGAATTTTATTCGAGAGCGGGAAACAAATGGGAGATAACGTGGACATGAGCCAGC AATTGAGCAATCACGGAGTAACGGTTTCGAGCATCAGTGACATTTTAGGAAGTAAGGAGTCGGCCTATGGACATTTAGCGAAATGTTTCTACATATCTAA CATGGGCAATAACGATTACATCAACAACTATCTTCTTCCTCAATCTTCCGACATTAGGAAAAAGTACAACCCAGATCAATTTGCAGCTCTTCTCATCGAG AAATATACCGTCCAGATTAAGTCGGTGTACAGTTTGGGAGCAAGGAAGGTGGGTTTGGTTGGAGTTTCACCCATAGGCTGCACCCCAAATGCCATTGCGG CTTCGGGTGGGACCAAAGGCTTGCTCTGCGATGACTCCGTCAACGAGATCGTCGAGCCGTTCAATGTTCGCCTTCGATCGCTTGTTGACCAGTTCAATAT CGATTTTCCCGATGCAAAATTCATGTACTTGGATTCGACATTGGCTAGCACTCTTGCCGGTCTAGCATTTCCGATTAGAACAGTACCATGTTGCCAAGTG AGCTCTATCACCGGACTGTGCATTCCAAATTCTGCACCATGCCCCGCTTTGATAAGACACACGTATTTGTTTTGGGATGCATTCCATCCGGTGGAAGCTT CGAATCGGATGGTCGCGTCCATTTTCTACGAGGCTATTAAACCGATATTGTAA
AA sequence Show only first row Show all	>Lus10012002 pacid=23161406 polypeptide=Lus10012002 locus=Lus10012002.g ID=Lus10012002.BGIv1.0 annot-version=v1.0 MERPSESPSLALLIIVVVLVAASADGAPEVPCYFIFGDSLFDNGNNNNLDTSTKSNYPPYGIAFPAGPTGRFTNGRTTADIVGELMGFESFIPSFASNPS RSELLVGVNYASASAGILFESGKQMGDNVDMSQQLSNHGVTVSSISDILGSKESAYGHLAKCFYISNMGNNDYINNYLLPQSSDIRKKYNPDQFAALLIE KYTVQIKSVYSLGARKVGLVGVSPIGCTPNAIAASGGTKGLLCDDSVNEIVEPFNVRLRSLVDQFNIDFPDAKFMYLDSTLASTLAGLAFPIRTVPCCQV SSITGLCIPNSAPCPALIRHTYLFWDAFHPVEASNRMVASIFYEAIKPIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10012002 [exp]	0	1
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10022443 [exp]	5.8	0.8908
					Lus10021921 [exp]	9.0	0.8050
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10023211 [exp]	10.1	0.8695
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10025729 [exp]	13.3	0.8751
AT3G45070			P-loop containing nucleoside t...		Lus10033716 [exp]	14.7	0.8439
AT4G11290			Peroxidase superfamily protein...		Lus10027163 [exp]	22.4	0.8616
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10040331 [exp]	23.6	0.7375
AT3G45070			P-loop containing nucleoside t...		Lus10031624 [exp]	25.5	0.8386
AT5G24070			Peroxidase superfamily protein...		Lus10004804 [exp]	26.5	0.8455
AT5G46230			Protein of unknown function, D...		Lus10001891 [exp]	27.3	0.8143

Compare expression of checked genes

Lus10012002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.