Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42130 368 / 2e-128 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) AT3G58010 362 / 3e-126 PGL34 plastoglobulin 34kD (.1) AT2G35490 51 / 5e-07 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G04020 50 / 8e-07 FIB fibrillin (.1) AT4G22240 45 / 3e-05 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016263 [exp] 471 / 2e-169 AT2G42130 346 / 1e-120 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Lus10004171 [exp] 433 / 8e-155 AT2G42130 378 / 3e-133 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Lus10021055 [exp] 320 / 1e-109 AT2G42130 286 / 1e-96 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Lus10001099 [exp] 62 / 1e-10 AT4G22240 362 / 5e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10014790 [exp] 61 / 2e-10 AT4G22240 363 / 2e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10035384 [exp] 50 / 9e-07 AT2G35490 357 / 5e-122 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10030987 [exp] 50 / 1e-06 AT2G35490 354 / 5e-121 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G192200 [exp] 395 / 5e-139 AT2G42130 361 / 1e-125 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Potri.016G045900 [exp] 391 / 2e-137 AT2G42130 366 / 1e-127 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2.3.4.5) Potri.003G095900 [exp] 54 / 3e-08 AT2G35490 334 / 5e-113 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.004G003200 [exp] 47 / 6e-06 AT4G22240 380 / 1e-132 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10012003 pacid=23161473 polypeptide=Lus10012003 locus=Lus10012003.g ID=Lus10012003.BGIv1.0 annot-version=v1.0 ATGTCTGCTGCAACCATCGCCTCTTCGATTCCATCAATTCCGGCTACTTGTTACCGGAACTCGTCAACGGCCTCTCCTTCCTACTACTATTACTCAACCT GCATCCCAAACACCTCGAGTAGTAGCTCCGCTCGCCGGAAAGTTGGCCGATGGACGCCGTGCAGAGCGATGGTTCAGCATGCTGTACAGGGAGCTCCTGC GGCTTATGCCAAGGAGATGGAGCGGCTTTCAGCTAAGGAATCGCTGCTTCTTGCTTTCAAAGATGCTGGAGGATTTGAAGCTCTGGTCACCGGGAAGACA ACAGAAGTGCAGCAGATTGATGTGAATGAAATGATCATCGGTCTTGAGCGTCTCAATCCAACGCCTAGGCCAACTACATCGCCATATTTGGACGGTCGTT GGAATTTCGAGTGGTTCGGAGCTGGAAGCCCTGGATTGTTTGCTGCTCGGCTCTTGTTTCAGAGATTTCCTTCAGATTTGGCTAATTTTTCGAATTTAGA TGTCGTCATTAAGGAAGGGAAGACAAAGGTGACAGGAAACATGAAGCTATTCAACTCGATAGACAGCACATTCACTCTCTCTTCACAGCTAATCGTGGAA GGTCCACTGAGAATGAAAGAGGAGTTCACCGAAGGGGTTCTTGAGACGCCGAAACTAATTGAAGAAACAGTACCAGAACAGCTAAAAGGAGCACTTGGTC AAGCTATTAGCACACTGCAACAACTCCCCGTTCCCATTAAGAATGTTATTGCTGGCGGCTTGAGAGTTCCACTAGCCGGTACCTTTCAGAGACTCTTCTT GATTTCATATCTCGACGAGGAAATACTGATAATGAGGGATGCTGCTGGAGTACCTGAAGTCCTTACCAGGCTGGAAACACCTGCAGCATTACCGATTCCG GATAATGCCGCGGAATACGAAAGCTAA
AA sequence Show only first row Show all	>Lus10012003 pacid=23161473 polypeptide=Lus10012003 locus=Lus10012003.g ID=Lus10012003.BGIv1.0 annot-version=v1.0 MSAATIASSIPSIPATCYRNSSTASPSYYYYSTCIPNTSSSSSARRKVGRWTPCRAMVQHAVQGAPAAYAKEMERLSAKESLLLAFKDAGGFEALVTGKT TEVQQIDVNEMIIGLERLNPTPRPTTSPYLDGRWNFEWFGAGSPGLFAARLLFQRFPSDLANFSNLDVVIKEGKTKVTGNMKLFNSIDSTFTLSSQLIVE GPLRMKEEFTEGVLETPKLIEETVPEQLKGALGQAISTLQQLPVPIKNVIAGGLRVPLAGTFQRLFLISYLDEEILIMRDAAGVPEVLTRLETPAALPIP DNAAEYES

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42130			Plastid-lipid associated prote...		Lus10012003 [exp]	0	1
AT2G37480			unknown protein		Lus10025314 [exp]	1.4	0.9296
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10021012 [exp]	6.0	0.8892
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10036745 [exp]	9.1	0.8738
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	9.2	0.9083
AT5G18640			alpha/beta-Hydrolases superfam...		Lus10033968 [exp]	10.0	0.9130
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	11.5	0.9114
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10041790 [exp]	11.5	0.8934
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	14.1	0.8950
AT5G61540			N-terminal nucleophile aminohy...		Lus10009560 [exp]	15.2	0.8948
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10000285 [exp]	15.7	0.8889

Compare expression of checked genes

Lus10012003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.