Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01995 283 / 9e-96 unknown protein AT1G64680 141 / 1e-40 unknown protein AT1G03055 112 / 2e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016264 [exp] 475 / 4e-171 AT4G01995 215 / 3e-69 unknown protein Lus10001667 [exp] 122 / 1e-33 AT1G64680 339 / 1e-119 unknown protein Lus10017338 [exp] 122 / 3e-31 AT1G02800 390 / 1e-130 cellulase 2 (.1) Lus10018752 [exp] 104 / 5e-26 AT1G03055 230 / 5e-75 unknown protein Lus10024837 [exp] 101 / 2e-24 AT1G03055 229 / 1e-73 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G194500 [exp] 327 / 6e-113 AT4G01995 285 / 3e-97 unknown protein Potri.001G083300 [exp] 132 / 1e-36 AT1G64680 383 / 8e-136 unknown protein Potri.005G216400 [exp] 97 / 3e-23 AT1G03055 235 / 8e-77 unknown protein Potri.002G046500 [exp] 96 / 4e-23 AT1G03055 258 / 3e-86 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012004 pacid=23161412 polypeptide=Lus10012004 locus=Lus10012004.g ID=Lus10012004.BGIv1.0 annot-version=v1.0 ATGAAGCCATTGGAGCTGCTTCGTCCTCCTCCTCTTCACTCTGTCTCTTCCGCTTCAGTCCGCCGTTTCTCGCCGGCGACGGATGCCCTCATCCGTAGAT CCAGACTCCGACTACCTTGCTCTTCAACTCAATCGGAGCCAGTTCGGTATCCTTCTTCCCAAAATTTCAATTACAGAGAATTGGTTTCCTCTAGTCACCA CTCCCGATTACCTGATTTTTATGACTTCTTTCAGACGAAACCGGAGGTTCTCCGGTCAGATTACAAACCTGGAGTACCCGATGACGTGTTTCTAGGCTTG TTCCGAAGCAGAATGGTGAAGGAGGTAGGCTGGGACTCTGAGAAGCCTGGATACGATGGACTGATCGAAGTGGCGAATCGGCTGATGCTGATTGGCAGAA GCAGTTCCTACACTAGAGATGCAGCTGTCCGGATATTGGTGTCTCTATTTCCTCCGTTTCTGTTGGAGGTCTACAAGATGCTGATATCGCCTCTGGCAGG AGGGCAGATTGCTGCGGTTATGGTTGCAAGGGTGACACAGCTGAGTTGCCAGTGGCTGATGGGGAAATGCAGTGTGAATACAGTTGATCTTCCTGATGGA ACTTCATGGGAGAGTGGGGTTTTTGTAGAGAAATGCAAGTATCTGGAAGAAAGCAAATGTGTTGGCATTTGTATCAACACTTGTAAGCTTCCAACACAGA CGTTCTTCAACGACTATATGGGAGTTCCTCTGCTGATGGAGCCAAATTTCACTGACTATAGTTGTCAGTTCAAGTTTGGAATGGCGGCACCGCAGCCAGA AGATGATGTTGCTGTGAAGGAGCCATGCTTGGCGATCTGCCCAACTGCTAGTAGAAGAAGGATTGTTCCTGATAGCACAGTTCAATGTCCCAAGGCGTAG
AA sequence Show only first row Show all	>Lus10012004 pacid=23161412 polypeptide=Lus10012004 locus=Lus10012004.g ID=Lus10012004.BGIv1.0 annot-version=v1.0 MKPLELLRPPPLHSVSSASVRRFSPATDALIRRSRLRLPCSSTQSEPVRYPSSQNFNYRELVSSSHHSRLPDFYDFFQTKPEVLRSDYKPGVPDDVFLGL FRSRMVKEVGWDSEKPGYDGLIEVANRLMLIGRSSSYTRDAAVRILVSLFPPFLLEVYKMLISPLAGGQIAAVMVARVTQLSCQWLMGKCSVNTVDLPDG TSWESGVFVEKCKYLEESKCVGICINTCKLPTQTFFNDYMGVPLLMEPNFTDYSCQFKFGMAAPQPEDDVAVKEPCLAICPTASRRRIVPDSTVQCPKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01995			unknown protein		Lus10012004 [exp]	0	1
AT3G16190			Isochorismatase family protein...		Lus10037581 [exp]	1.4	0.8677
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Lus10028120 [exp]	2.4	0.8400
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10013734 [exp]	8.0	0.8221
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10010651 [exp]	8.1	0.8482
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012482 [exp]	8.5	0.8343
AT5G47435			formyltetrahydrofolate deformy...		Lus10028958 [exp]	9.8	0.8282
AT4G35640		ATSERAT3;2	serine acetyltransferase 3;2 (...		Lus10010679 [exp]	10.9	0.7552
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	16.1	0.8245
AT1G16670			Protein kinase superfamily pro...		Lus10028149 [exp]	17.2	0.8299
AT1G53120			RNA-binding S4 domain-containi...		Lus10041931 [exp]	19.0	0.7934

Compare expression of checked genes

Lus10012004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.