Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G66654 227 / 3e-74 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT2G47320 171 / 9e-53 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 89 / 1e-19 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT2G36130 79 / 5e-18 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G01940 70 / 1e-14 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G67530 71 / 1e-13 ATPUB49 plant U-box 49 (.1) AT2G15790 64 / 1e-11 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT2G29960 63 / 1e-11 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G13120 61 / 9e-11 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT5G58710 60 / 1e-10 ROC7 rotamase CYP 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016265 [exp] 393 / 6e-140 AT3G66654 260 / 4e-88 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10004174 [exp] 319 / 1e-110 AT3G66654 272 / 8e-93 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10021052 [exp] 309 / 1e-106 AT3G66654 282 / 1e-96 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10020573 [exp] 91 / 2e-20 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10006271 [exp] 91 / 2e-20 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10004731 [exp] 73 / 3e-14 AT5G67530 916 / 0.0 plant U-box 49 (.1) Lus10003138 [exp] 70 / 1e-13 AT5G13120 333 / 2e-115 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10011330 [exp] 69 / 1e-13 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10007794 [exp] 71 / 2e-13 AT5G67530 868 / 0.0 plant U-box 49 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105800 [exp] 239 / 4e-79 AT3G66654 306 / 2e-106 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.010G144500 [exp] 229 / 3e-75 AT3G66654 311 / 2e-108 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.002G194250 [exp] 94 / 6e-23 AT2G47320 125 / 1e-35 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G146400 [exp] 88 / 2e-19 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.016G075600 [exp] 77 / 5e-17 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G149700 [exp] 71 / 8e-15 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G060200 [exp] 64 / 1e-11 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.005G135500 [exp] 64 / 2e-11 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.003G167700 [exp] 63 / 2e-11 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.004G144300 [exp] 63 / 5e-11 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10012005 pacid=23161490 polypeptide=Lus10012005 locus=Lus10012005.g ID=Lus10012005.BGIv1.0 annot-version=v1.0 ATGGCGAGGATTAAACCTCAAGCTCTGTTGCAACAGAGCAAGAAGAAGAAAGCGCCGAGCAGTATAAGCGCCACAACTGTCATAATCTGCAGTTTGATCG CTGTTTTGGCTTTGTTCTTCCTCTACTCCACTTACAAGCACCGTTCCATCAGGTTCCGTCCGTCGCGATCTGCAGCTCTTTTTTTCCCCTTCCAACTTAT GAATTCTTCTGATGGTCGTAAGCTTCAGGAATTGGTCGAATCTGATATCCCTGGATATGCGATCTTTACTACATCAAAAGGGCCTATGACTGTGGAGCTT TTAAAGGATAGCTCTCCTCAAATCATTGAGAAATTCATTGACTTATGTAAGAAGGGGCATTTCAAGGGGATGCAATTTCTTCGCGTGGTAAACCGCTATG TGATTCAAGCAGGGAACACTGATAATCTGGGCAATATAGAGGATTGGACTGTGAAAGGAAACGATAATGCGCAACTTCATTCAAGTGTGAAACACGAATC ATTAATGGTTGGAACTTCGAAGGGTAAACATGACGACAAAGGATTCGACCTTTTCATCACAACTGCACCAATACCAGACCTTAACGAGAAGCTGGTGGTT TTTGGACGAGTTGTCAAGGGAGAAGATGTAGTTCAGGAAATCGAAGAGGTGGATACCGACGAACACTACAAGCCTAAGAGTCGAATAGAAATCACCGGTG TCGCTCTACAACAGAAAGTTTTAGGTCCTAACTGGAGTTTAAAACCTTCTTTTACACGGCAATTCCTGCTCTCCATTGTGTTTCAAGCCAACATTGGAAG GATGGTAAATGATTCGATCTGA
AA sequence Show only first row Show all	>Lus10012005 pacid=23161490 polypeptide=Lus10012005 locus=Lus10012005.g ID=Lus10012005.BGIv1.0 annot-version=v1.0 MARIKPQALLQQSKKKKAPSSISATTVIICSLIAVLALFFLYSTYKHRSIRFRPSRSAALFFPFQLMNSSDGRKLQELVESDIPGYAIFTTSKGPMTVEL LKDSSPQIIEKFIDLCKKGHFKGMQFLRVVNRYVIQAGNTDNLGNIEDWTVKGNDNAQLHSSVKHESLMVGTSKGKHDDKGFDLFITTAPIPDLNEKLVV FGRVVKGEDVVQEIEEVDTDEHYKPKSRIEITGVALQQKVLGPNWSLKPSFTRQFLLSIVFQANIGRMVNDSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	0	1
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10016265 [exp]	1.7	0.8260
AT4G08520			SNARE-like superfamily protein...		Lus10037624 [exp]	3.5	0.7916
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10032100 [exp]	3.9	0.7208
AT1G42480			unknown protein		Lus10030732 [exp]	5.1	0.7275
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	5.5	0.7571
AT1G20540			Transducin/WD40 repeat-like su...		Lus10034576 [exp]	7.5	0.7421
AT1G51540			Galactose oxidase/kelch repeat...		Lus10033376 [exp]	7.7	0.7492
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10035615 [exp]	9.9	0.7298
AT5G57330			Galactose mutarotase-like supe...		Lus10041629 [exp]	11.8	0.6459
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10009825 [exp]	12.0	0.7456

Compare expression of checked genes

Lus10012005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.