Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020748 [exp] 129 / 2e-34 AT3G28410 73 / 4e-14 F-box/RNI-like superfamily protein (.1) Lus10022888 [exp] 119 / 3e-31 ND 38 / 0.010 Lus10002239 [exp] 84 / 3e-18 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10024696 [exp] 75 / 5e-15 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10042477 [exp] 73 / 3e-14 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10007058 [exp] 71 / 2e-13 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10001507 [exp] 69 / 6e-13 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029586 [exp] 65 / 1e-11 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10024695 [exp] 64 / 3e-11 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 48 / 5e-06 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 44 / 7e-05 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012006 pacid=23161486 polypeptide=Lus10012006 locus=Lus10012006.g ID=Lus10012006.BGIv1.0 annot-version=v1.0 ATGGATATGACGAACAACAGTCGCCGCGAGGCAGGGAAAGCTTGGGAAAAGCAATCTGGAAAAGAAGAAGATGATGATTCTTCTATGGACAGGTTGAACT ATCTTCCGGAGCCACTGATTCGTCACATCCTGACGTTAATGGACACCAGATCAGCTAGCTGTTCAGACCTTAGTACTATCCCGAAGATGGAGATGCACCT GGAAACACCTATCTGTTCTCGATTTTCGTCTAAGAACATGTCGAACTATCTCTCCTCCGATCTTCAAAAGTTGGTGTTGAATACTATCTTCAACAATGGT AATGATGATATCAGATTGAGGATTTCTGGCCTCCAGCTGCTTAGTCTCAGTCTCTCGGACAGTGGTTTTCACAAGATGGAAATATACACCCCGAAACTGA AACACTTCACTCTCTTGTATTCTCACCACCTCGTGGAATTCACAGAGCTGGCCCTTCCTTCTCTTGATCGTGCTGACATTCACGTTGAGTATCTAAGGGT TCTGTCTGAGGAATTCACAGAGCTGGCCCTTCCTTCTCTTGATCGTGCTGACATTCACGTTGAGTATCTAAGGGTTCTGTCTGAGGATGAGGGTACGGAC GGTGAGGTTGAGGATGAGGGTATGGACGGTGAGGTTGAGGATGAGGGTACGGACGGTGAGTTCGATGTTGAGGATTGGAACGAATATACAAAGCAACAAA TGGTTCCCTTTTTCCATGGGTTGAGTAATGCAACTAGTCTTGTGCTGTGTTCCCGTACCATCCAGCTGCTTTGGAAGATCTCTTATTATCTCGAAGATCA ACCCTCTCCATTTACGAGATTGAAGTCCTTGATCGTGGGCTCTCCTTCGCGCTCTCCCGATGATGTACTTTCCTCACTACTCAACTATTTCCTTAAAGGG TCTTCTGATATGAAGCCAGTTGTCAAGTTTAGTTAA
AA sequence Show only first row Show all	>Lus10012006 pacid=23161486 polypeptide=Lus10012006 locus=Lus10012006.g ID=Lus10012006.BGIv1.0 annot-version=v1.0 MDMTNNSRREAGKAWEKQSGKEEDDDSSMDRLNYLPEPLIRHILTLMDTRSASCSDLSTIPKMEMHLETPICSRFSSKNMSNYLSSDLQKLVLNTIFNNG NDDIRLRISGLQLLSLSLSDSGFHKMEIYTPKLKHFTLLYSHHLVEFTELALPSLDRADIHVEYLRVLSEEFTELALPSLDRADIHVEYLRVLSEDEGTD GEVEDEGMDGEVEDEGTDGEFDVEDWNEYTKQQMVPFFHGLSNATSLVLCSRTIQLLWKISYYLEDQPSPFTRLKSLIVGSPSRSPDDVLSSLLNYFLKG SSDMKPVVKFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012006 [exp]	0	1
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10001591 [exp]	4.0	0.7902
AT5G41620			unknown protein		Lus10003027 [exp]	6.2	0.7510
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	9.1	0.7975
AT5G08139			RING/U-box superfamily protein...		Lus10023235 [exp]	9.6	0.7943
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10015537 [exp]	11.0	0.7613
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10019260 [exp]	12.5	0.7908
AT5G60610			F-box/RNI-like superfamily pro...		Lus10004718 [exp]	19.0	0.7233
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10037056 [exp]	19.6	0.7674
AT3G10210			SEC14 cytosolic factor family ...		Lus10031044 [exp]	19.7	0.7645
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10016980 [exp]	19.8	0.7477

Compare expression of checked genes

Lus10012006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.