Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12120 266 / 8e-90 FAD2 fatty acid desaturase 2 (.1.2) AT3G11170 103 / 2e-26 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT5G05580 100 / 2e-25 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT2G29980 98 / 1e-24 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT4G30950 45 / 1e-05 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029283 [exp] 336 / 2e-120 AT3G12120 266 / 8e-90 fatty acid desaturase 2 (.1.2) Lus10004175 [exp] 300 / 6e-103 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021051 [exp] 299 / 2e-102 AT3G12120 634 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021048 [exp] 244 / 6e-84 AT3G12120 246 / 2e-81 fatty acid desaturase 2 (.1.2) Lus10004178 [exp] 242 / 6e-80 AT3G12120 532 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 235 / 2e-77 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 234 / 5e-77 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004177 [exp] 226 / 8e-74 AT3G12120 508 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021049 [exp] 223 / 1e-72 AT3G12120 503 / 4e-179 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046200 [exp] 273 / 3e-92 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 263 / 8e-88 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.006G192000 [exp] 256 / 2e-85 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 250 / 3e-83 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 203 / 1e-65 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2) Potri.001G252900 [exp] 103 / 1e-26 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.008G069600 [exp] 102 / 5e-26 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.010G187800 [exp] 101 / 1e-25 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 100 / 2e-25 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 100 / 5e-25 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10012007 pacid=23161448 polypeptide=Lus10012007 locus=Lus10012007.g ID=Lus10012007.BGIv1.0 annot-version=v1.0 ATGGAGATATACCTATCCGACGCAGGGATATTCACCGTGTGCTACATCCTATACAGACTCGTCCTCACGAAAGGACTCGTTTGGGTCGTGTCCATTTACG GAGTCCCACTATTGATAGTGAATGGATTCCTAGTCCTCATCACTTTCTTGCAGCACACGCATCCTTCTCTTCCGCACTACAAGTCCTCCGAATGGGACTG GCTGCGAGGCGCCCTCTCGACCGTGGATCGAGACTACGGGTTACTCAACACCGTGTTCCACAACATCACCGATACACATGTCGCGCACCATCTCTTCTCC ACGATGCCTCATTACCACGCGATGGAGGCTACCAAGGCGATCAAGCCGGTTCTCGGGGAGTATTACCAGTTCGATGGGACTCCCTTTGTGAAGGCCATGT GGAGGGAGGCAAAGGAGTGCATCTATGTCGAGCCGGATGAAGGCGACCCCAGCCAAGGCGTGTTCTGGTACAACAACAAGCTGTGA
AA sequence Show only first row Show all	>Lus10012007 pacid=23161448 polypeptide=Lus10012007 locus=Lus10012007.g ID=Lus10012007.BGIv1.0 annot-version=v1.0 MEIYLSDAGIFTVCYILYRLVLTKGLVWVVSIYGVPLLIVNGFLVLITFLQHTHPSLPHYKSSEWDWLRGALSTVDRDYGLLNTVFHNITDTHVAHHLFS TMPHYHAMEATKAIKPVLGEYYQFDGTPFVKAMWREAKECIYVEPDEGDPSQGVFWYNNKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012007 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029283 [exp]	1.0	0.9679
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012008 [exp]	2.8	0.7860
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10020387 [exp]	4.9	0.7443
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039302 [exp]	14.8	0.7678
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10033435 [exp]	17.7	0.7040
AT2G33250			unknown protein		Lus10023703 [exp]	23.7	0.7408
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10002422 [exp]	26.8	0.7470
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10036176 [exp]	30.2	0.7257
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10004987 [exp]	32.2	0.7239
AT3G24590		PLSP1	plastidic type i signal peptid...		Lus10034925 [exp]	33.2	0.7291

Compare expression of checked genes

Lus10012007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.