Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12120 248 / 1e-82 FAD2 fatty acid desaturase 2 (.1.2) AT2G29980 106 / 1e-28 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT5G05580 103 / 4e-27 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT3G11170 103 / 9e-27 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT4G30950 66 / 5e-13 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029284 [exp] 303 / 1e-107 AT3G12120 245 / 1e-81 fatty acid desaturase 2 (.1.2) Lus10004175 [exp] 284 / 1e-96 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021051 [exp] 283 / 2e-96 AT3G12120 634 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 220 / 6e-72 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 220 / 7e-72 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 218 / 5e-71 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004178 [exp] 217 / 2e-70 AT3G12120 532 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004177 [exp] 214 / 2e-69 AT3G12120 508 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021047 [exp] 213 / 4e-69 AT3G12120 502 / 9e-179 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G192000 [exp] 256 / 5e-86 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.016G046200 [exp] 251 / 1e-83 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 219 / 3e-72 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 214 / 1e-69 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 215 / 4e-69 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G252900 [exp] 109 / 3e-29 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.016G117500 [exp] 109 / 1e-28 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 107 / 6e-28 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.010G187800 [exp] 106 / 1e-27 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 102 / 3e-26 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10012008 pacid=23161460 polypeptide=Lus10012008 locus=Lus10012008.g ID=Lus10012008.BGIv1.0 annot-version=v1.0 ATGGGTGCCGGTGGCAGAATGTCAGTGCCTCCATCATCCAAACCTATGAAGAGGTCTCCTTACTCAAAGCCACCATTCACGCTCGGTGAGCTCAAGAAGG CCATCCCTCCACACTGTTTCAAACGCTCAATCCCCCGATCGTTCGCCTACGTGGCGTACGACCTCACCATTGCAGCAATCTTCTACTACATCGCCACCAC TTACTTCCACCTCCTCCCTAGCCCTCTCAACTACCTCGCCTGGCCGGTCTACTGGGCCTGCCAGGGCTGCATCCTCACTGGAGTATGGGTGTTGGCTCAC GAATGCGGTCACCATGCCTTCAGCGACTACCAGTGGCTCGACGACATGGTTGGCTTCGTCCTCCATTCGTCCCTCCTTGTTCCTTACTTCTCCTGGAAGC ACAGCCACCGCCGCCACCATTCAAACACGGGGTCGCTTCTCCGGGAGACCATATGA
AA sequence Show only first row Show all	>Lus10012008 pacid=23161460 polypeptide=Lus10012008 locus=Lus10012008.g ID=Lus10012008.BGIv1.0 annot-version=v1.0 MGAGGRMSVPPSSKPMKRSPYSKPPFTLGELKKAIPPHCFKRSIPRSFAYVAYDLTIAAIFYYIATTYFHLLPSPLNYLAWPVYWACQGCILTGVWVLAH ECGHHAFSDYQWLDDMVGFVLHSSLLVPYFSWKHSHRRHHSNTGSLLRETI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012008 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029284 [exp]	1.0	0.8965
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029283 [exp]	2.0	0.8195
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012007 [exp]	2.8	0.7860
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10039241 [exp]	4.6	0.8138
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022220 [exp]	6.3	0.7603
AT5G09650		ATPPA6	pyrophosphorylase 6 (.1)		Lus10035653 [exp]	8.7	0.7245
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	13.6	0.7646
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10013370 [exp]	14.7	0.7649
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10027486 [exp]	18.3	0.7667
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10009147 [exp]	23.2	0.7078

Compare expression of checked genes

Lus10012008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.