Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09670 270 / 2e-80 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G02950 214 / 2e-60 Tudor/PWWP/MBT superfamily protein (.1) AT5G40340 109 / 1e-24 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 100 / 9e-22 Tudor/PWWP/MBT superfamily protein (.1) AT5G27650 98 / 7e-21 Tudor/PWWP/MBT superfamily protein (.1) AT3G27860 89 / 3e-18 Tudor/PWWP/MBT superfamily protein (.1) AT3G48190 81 / 2e-15 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016267 [exp] 783 / 0 AT3G09670 276 / 9e-82 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10040367 [exp] 194 / 8e-52 AT5G02950 209 / 8e-56 Tudor/PWWP/MBT superfamily protein (.1) Lus10023486 [exp] 192 / 4e-51 AT5G02950 207 / 2e-55 Tudor/PWWP/MBT superfamily protein (.1) Lus10014546 [exp] 134 / 4e-32 AT5G40340 184 / 2e-47 Tudor/PWWP/MBT superfamily protein (.1) Lus10032141 [exp] 131 / 2e-31 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10015177 [exp] 105 / 5e-23 AT5G27650 634 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10031498 [exp] 104 / 6e-23 AT5G27650 633 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10002382 [exp] 81 / 2e-15 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10042113 [exp] 72 / 2e-12 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G085500 [exp] 305 / 1e-94 AT3G09670 260 / 4e-77 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.006G131800 [exp] 309 / 1e-93 AT3G09670 236 / 2e-66 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.010G216900 [exp] 235 / 9e-66 AT3G09670 235 / 7e-65 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.008G044600 [exp] 232 / 1e-64 AT5G02950 279 / 2e-80 Tudor/PWWP/MBT superfamily protein (.1) Potri.004G130600 [exp] 135 / 7e-33 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1) Potri.005G026800 [exp] 106 / 2e-23 AT5G27650 431 / 1e-132 Tudor/PWWP/MBT superfamily protein (.1) Potri.013G018700 [exp] 103 / 2e-22 AT5G27650 687 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Potri.012G081500 [exp] 90 / 2e-18 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.008G209900 [exp] 57 / 4e-09 AT5G27650 149 / 1e-41 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Lus10012010 pacid=23161468 polypeptide=Lus10012010 locus=Lus10012010.g ID=Lus10012010.BGIv1.0 annot-version=v1.0 ATGTCCGGCGACGCTGTTGAGTTGAACGCTGACGGCGGAGCTTCCGGTAAGCCGGGAAAAGTTGGTCTGAATGTTGCTGAATCCGAAGCAGCCACGGTTA AGGTTGTTGCTTGCTCGGGTGCTGAAACCCTAGTTGACTCTGCAGTCAACGGTCTGAAAGAGAAGGCAGAAGGAGACGAGGAAGTTAGTATGGTTGAGCT AATCGATGAGTTGAAGGATGCAGTGGAATTTTCTCGTGAGCAAGGAGGTGAAGAAGATGAAGAAGAACATTCTGAGAAGGCTGAATTGGACGCTTCATGC GAGCCTAGCAGCTCGAAAGGCGGCGGTCGTTTGAGATCCAAATTCGGGGATTCCGATTTGGTGTGGGCAAAAGTAAGGAGTCATCCGTGGTGGCCAGGGC AGGTGTTTGATGCTTCCATGGCATCAGATAAGGCTAAGAAGTATATGAAGAAGGAAAGGCATCTGATAGCTTACTTCGGGGATCAATCGTTTGCTTGGAA CGAAATATCAAAGATAAAGCCCTTTCGCACTCATTTTTCACAGATGTCGAATCAGAAGAATAGCAATATGGAGGACTTTCACGATGCTGTTGATGATGCT CTTGATGAAGTTTCCAGACGTGTGGAGTTCGGCCTGTCGTGCCCTTGTGTGGCTGAGCACAGCCGGATCAGAACTCAGGTAATTGTCAACCCTGGAATTA AGGATGAATGTTGTAGAAGGGATGGTAGTGATAGATTTTCCAGTGTTGATTCGTTTGAACCAGATAAACTCGTTGAGTGCATCAAAAGACTAGGTCGAAT TGGTCCATCGTCATTATTGAATGGTGTTGAAAGGCTGGAATTCATAACTGCTCGAGCACAGTTATTGGCGTTTAGTCGTTGGAAGGGCTTTCCTGAGTTG CCTGAACTCCAAGTTCTCGGGACAGTGTTGAACGAAGCTGAAGCTGAAGCAGATGTTCCATTGTCTGATCGGAAGGAGAATGTCAGTATTATCGAGAGAG ACGATAAGCATGGGTTGTCTATCAAGACATATTCTAGTAAGAGGAAGCGCGATTCGGTGGTGGAGGGGGAACAACTTCCTGCGAAGAAAGAGAGAACTTT GGCTGATTATATTGCAGAGATGCGATCCTTGAAATCGAATGGTAAAGGCAAGTTGAACAGGGAGGAGACTGTGAAGTCTGCTGGAAAGAAGAAGAAGCGG AAGGCTGCTAATTCTGATGCAGGTTTCGGTTTTGGTGCGAAGAAGAAAAGGCATGATCTTTCAACTCCGGAAGGTAGTAAGAACATCAAAAGGCATGATC TTTTGACTCTGGAAGAAGGTAGTAAGAACATGGTGGTCGAGACGTCCTGCCCTAAGGGAAGTTTTGGAATTGGGTATAGCATCCTCAAGGTCGTGAGTCA AATGAACAGTCCATCCCCGATACTTAAGTCTCACACTGTGTCTTCTCGAAAGAGTAAAGAGAAGAAAGGAAGTAAGACTGAGGAGAAGAAGAAAGTAAGT AAGACTAAGGAGAAGAAGAAGAAGAAAGGAAGTGAAAAGAAGTCTGCAAAACCCAGGAGCAAAAGAGCACCGGAAGATCTCGACAAAGGAAGCGACGAGG TCCCGGAGTCTCAGGTTAACTCACCTCCGGATGTGCCGAACCAGAAACACAGGGAAGAAGCATCAAAGGTAGAAACAGAAATGCAAGATGAGCAAGAAGA AGGCACTGAGGAAGAAAATTTGTCAGAGGGAAATGGAAATTCAAAGGTGGAAACAGAAATGCAAGATGAGCAAGAAGAAGGCACCGATGAAGAAAATTTT CCAGAGGGAAATGAAATAAATGGGGAGGCTAGGACTCAGTCCGATGAGGTGATTCAAGACATTGAACTACTGCAACTGGGTGCTGAACAGGGCGATGATG CTTCAGTCCCTGAGCAGCAAAACTGTGACGAATATGTTGATTGTGTGGATGCAGTAAAGGAGCAGCAGGAGTTGCAGAGTTCTGTGTTGGGATCAGCATG A
AA sequence Show only first row Show all	>Lus10012010 pacid=23161468 polypeptide=Lus10012010 locus=Lus10012010.g ID=Lus10012010.BGIv1.0 annot-version=v1.0 MSGDAVELNADGGASGKPGKVGLNVAESEAATVKVVACSGAETLVDSAVNGLKEKAEGDEEVSMVELIDELKDAVEFSREQGGEEDEEEHSEKAELDASC EPSSSKGGGRLRSKFGDSDLVWAKVRSHPWWPGQVFDASMASDKAKKYMKKERHLIAYFGDQSFAWNEISKIKPFRTHFSQMSNQKNSNMEDFHDAVDDA LDEVSRRVEFGLSCPCVAEHSRIRTQVIVNPGIKDECCRRDGSDRFSSVDSFEPDKLVECIKRLGRIGPSSLLNGVERLEFITARAQLLAFSRWKGFPEL PELQVLGTVLNEAEAEADVPLSDRKENVSIIERDDKHGLSIKTYSSKRKRDSVVEGEQLPAKKERTLADYIAEMRSLKSNGKGKLNREETVKSAGKKKKR KAANSDAGFGFGAKKKRHDLSTPEGSKNIKRHDLLTLEEGSKNMVVETSCPKGSFGIGYSILKVVSQMNSPSPILKSHTVSSRKSKEKKGSKTEEKKKVS KTKEKKKKKGSEKKSAKPRSKRAPEDLDKGSDEVPESQVNSPPDVPNQKHREEASKVETEMQDEQEEGTEEENLSEGNGNSKVETEMQDEQEEGTDEENF PEGNEINGEARTQSDEVIQDIELLQLGAEQGDDASVPEQQNCDEYVDCVDAVKEQQELQSSVLGSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Lus10012010 [exp]	0	1
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10000639 [exp]	3.2	0.8357
AT5G38720			unknown protein		Lus10008877 [exp]	6.2	0.8422
AT1G17130			Family of unknown function (DU...		Lus10013707 [exp]	10.0	0.8280
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10019609 [exp]	11.6	0.8354
AT5G09390			CD2-binding protein-related (....		Lus10015844 [exp]	24.8	0.7951
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Lus10010592 [exp]	27.2	0.7999
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10017919 [exp]	31.6	0.7776
AT4G33100			unknown protein		Lus10014752 [exp]	36.7	0.7736
					Lus10011965 [exp]	41.8	0.7635
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10018609 [exp]	43.0	0.7624

Compare expression of checked genes

Lus10012010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.