Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57990 276 / 1e-90 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016270 [exp] 593 / 0 AT3G57990 300 / 4e-100 unknown protein Lus10021042 [exp] 327 / 3e-110 AT3G57990 341 / 6e-116 unknown protein Lus10004184 [exp] 305 / 8e-102 AT3G57990 329 / 3e-111 unknown protein Lus10012012 [exp] 214 / 2e-69 ND 164 / 2e-50 Lus10016269 [exp] 201 / 1e-64 ND 169 / 1e-52 Lus10000401 [exp] 115 / 3e-31 AT3G57990 107 / 4e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046900 [exp] 301 / 5e-101 AT3G57990 345 / 3e-118 unknown protein Potri.006G191800 [exp] 289 / 1e-95 AT3G57990 299 / 1e-99 unknown protein Potri.003G088500 [exp] 102 / 5e-24 AT3G57990 58 / 5e-09 unknown protein Potri.001G145400 [exp] 99 / 1e-22 AT3G57990 80 / 3e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012013 pacid=23161401 polypeptide=Lus10012013 locus=Lus10012013.g ID=Lus10012013.BGIv1.0 annot-version=v1.0 ATGAAAGCCTCGCTCAAATTCCGAGACGAGCAGAACCCGCCGCTGTTCAGGGGGAAGATCCCTCTCAACATCCTCGGCTTCCCATTCCAGTCCGGGATCG TCGCCGGAGACTCCAAGGAGCTCTCCCTCAACCTCTCGACGTACTTCGATTCCGGCCCGTCGCTCAAGGTCTCGTACCGCCCCAACGATTCACGGAATCC GTTCTCGCTAGTGGTCAAGACAGGGACGGGGGATTTCGGATCTCCGATCTCCAGCCCGTTCGTGATGAGCGCCGAGTTCAATTTGATCGGGAACGGAAAC GGAAACCCTAGGTTCATGCTCCATTTCAAGCCTCGGTTGGGGGATTTCTCGATTAAGAAGTCGCAGACTTCAGTCGCGAAGAACGAAATCGTTAGGTCTT GGCGAAACGGCGTCGTGGTCAACGCGTCGCCCGATCTGGACGATGGATCCCTCCACGCGGTGGAGCTGGAGAAGCCGCCGGAGAATGGGATCGGAGCCAA GAGGTTTACTACTGCTCTGTCGCCGAAGACGACAACGAACGCGATCGCGGCGGGTTTATCGGGCGTGGAGGTGACAGCGGAGACGAAGCTTCCGATCAGA AGTCACGCTGTGATGAGTTTTCGATGGGGGCTTAGGGTTCCGGTGGCGACGAACAAACTCGGGAGCGGTTACGATGACCTGGATTGGATGATCAACTTCA AGAACATTCCTTTACTTGTGATGAACAAAATGGGGATAGAACTGGTGGACAAATCCGATTTGAAATCCAAATCGAAATCGGCGGAGAGTACTATCAAGCA GAAGCCTGACGATGTGGCGGCGGTGAACCGGCAGCTGGAAATGCTGCAAAGGGAGAATGAGTTGCTCAAGAGAGGAATGGATGATCTGAGGCATGAGATT GGCGGGAGGAACATATTCCTTATGCAGAATCCGGATTCTGGATTCAACAGGTACAGAGAAGAAGCTGATAGGAATCAGAGTAGGAATCCGAGTGGGAATC GGATTGAGAAGAAGAAGAAGCAGAGTTCATCAGTGGAAGAAGATGTGAGTGAGGAGCTGAAGAAAGCTTTGAAAGTAGCTGCAAATTGTGGTCCTTGA
AA sequence Show only first row Show all	>Lus10012013 pacid=23161401 polypeptide=Lus10012013 locus=Lus10012013.g ID=Lus10012013.BGIv1.0 annot-version=v1.0 MKASLKFRDEQNPPLFRGKIPLNILGFPFQSGIVAGDSKELSLNLSTYFDSGPSLKVSYRPNDSRNPFSLVVKTGTGDFGSPISSPFVMSAEFNLIGNGN GNPRFMLHFKPRLGDFSIKKSQTSVAKNEIVRSWRNGVVVNASPDLDDGSLHAVELEKPPENGIGAKRFTTALSPKTTTNAIAAGLSGVEVTAETKLPIR SHAVMSFRWGLRVPVATNKLGSGYDDLDWMINFKNIPLLVMNKMGIELVDKSDLKSKSKSAESTIKQKPDDVAAVNRQLEMLQRENELLKRGMDDLRHEI GGRNIFLMQNPDSGFNRYREEADRNQSRNPSGNRIEKKKKQSSSVEEDVSEELKKALKVAANCGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57990			unknown protein		Lus10012013 [exp]	0	1
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10038866 [exp]	2.0	0.8611
AT5G45320			unknown protein		Lus10037259 [exp]	3.5	0.7653
AT4G18400			unknown protein		Lus10023291 [exp]	5.1	0.7431
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10014986 [exp]	5.3	0.7933
AT1G72100			late embryogenesis abundant do...		Lus10037401 [exp]	5.9	0.7267
AT3G62820			Plant invertase/pectin methyle...		Lus10007873 [exp]	6.5	0.7947
AT5G11260	bZIP	TED5, HY5	REVERSAL OF THE DET PHENOTYPE ...		Lus10002028 [exp]	7.2	0.8103
AT3G11690			unknown protein		Lus10013608 [exp]	7.4	0.7959
AT5G11810			unknown protein		Lus10022300 [exp]	9.9	0.8042
AT2G43250			unknown protein		Lus10040469 [exp]	10.6	0.7873

Compare expression of checked genes

Lus10012013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.