Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18900 437 / 8e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G06300 419 / 6e-149 P4H2, AT-P4H-2 prolyl 4-hydroxylase 2, P4H isoform 2 (.1) AT3G28480 362 / 3e-126 Oxoglutarate/iron-dependent oxygenase (.1.2) AT3G28490 339 / 2e-117 Oxoglutarate/iron-dependent oxygenase (.1) AT1G20270 253 / 1e-83 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G35810 244 / 3e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G17720 244 / 5e-80 P4H5 prolyl 4-hydroxylase 5, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G66060 235 / 1e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G25600 204 / 2e-64 Oxoglutarate/iron-dependent oxygenase (.1) AT2G43080 186 / 2e-57 AT-P4H-1 P4H isoform 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016271 [exp] 583 / 0 AT5G18900 444 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032183 [exp] 354 / 6e-123 AT3G28480 434 / 3e-154 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10014502 [exp] 332 / 3e-114 AT3G28480 398 / 4e-140 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10028404 [exp] 244 / 5e-80 AT5G66060 486 / 8e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10041857 [exp] 244 / 6e-80 AT5G66060 488 / 2e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10005620 [exp] 224 / 2e-71 AT1G20270 465 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017249 [exp] 207 / 8e-65 AT1G20270 455 / 3e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031048 [exp] 190 / 2e-59 AT2G43080 406 / 7e-145 P4H isoform 1 (.1) Lus10038855 [exp] 177 / 4e-53 AT4G25600 250 / 2e-81 Oxoglutarate/iron-dependent oxygenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G197700 [exp] 502 / 0 AT5G18900 448 / 3e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G075100 [exp] 361 / 1e-125 AT3G28480 436 / 3e-155 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.017G075300 [exp] 308 / 9e-106 AT3G28480 345 / 5e-120 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.005G108000 [exp] 249 / 5e-82 AT5G66060 405 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.005G245300 [exp] 237 / 2e-77 AT1G20270 483 / 3e-174 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.007G060800 [exp] 236 / 2e-76 AT5G66060 349 / 6e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.012G142800 [exp] 228 / 2e-73 AT4G25600 278 / 4e-93 Oxoglutarate/iron-dependent oxygenase (.1) Potri.010G027201 [exp] 207 / 3e-66 AT5G18900 204 / 3e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G232100 [exp] 182 / 6e-56 AT2G43080 456 / 4e-164 P4H isoform 1 (.1) Potri.001G296800 [exp] 171 / 8e-52 AT4G33910 441 / 6e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0213 [flax] [poplar] ShK-like PF01549 [flax] [poplar] ShK ShK domain-like CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10012014 pacid=23161400 polypeptide=Lus10012014 locus=Lus10012014.g ID=Lus10012014.BGIv1.0 annot-version=v1.0 ATGGCTGCTGGTTGGATACCTCTCTTCCTATTCTGGATCTCATTTCTACTCCACAAATCCATCGCTTACCCTGTTACTTCCAGCTCCGCCATTGATCCCT CCAAAGTCAAACAGGTCTCCTGGAAGCCAAGAGCATTTGTGTACCAGGGGTTTCTCACCGACTTGGAATGCGATCACCTCATCTCCCTTGCGAAATCAGA GCTGAAGAGATCAGCTGTTGCTGATAATGTCAGCGGGCAGAGTCAGCTAAGCGAAGTTCGAACCAGCTCTGGCATGTTCATTCGCAAAGGAAAGGATCCG ATTGTTGATGGTATAGAAGAGAAAATAGCAGCCTGGACCTTTCTGCCTAAAGAAAATGGGGAGGATATTCAGGTGTTAAGGTATGAGCATGGACAGAAGT ACGATCCACATTACGATTACTTCACCGACAAGGTCAACATCGCTCGCGGTGGACACCGTGTCGCGACTGTGCTCATGTATCTCACCGATGTCCAAAAGGG TGGCGAAACCGTGTTCCCTTCTGCAGAGGAACCTCCGCGTCGTCGTAGAGCTGCGACGAAAGAAGAAGACCTCTCCGAATGCGCCAAGAAAGGAGTTGCA GTGAGGCCAAGGAGAGGAGACGCGCTACTGTTCTTCAGCCTGCATCCGACTGCGGTACCGGACACGAGCAGCCTCCACGCAGGGTGTCCGGTGATCGAGG GAGAGAAATGGTCGGCAACTAAGTGGATCCACGTGAGCTCGTTTGACAAACAGATAGAGGTAGGCGGGAACTGTACCGATAACAACGATAGTTGCGAGAG GTGGGCAGCTCTAGGGGAGTGCACTAAGAATCCGGAGTATATGGTGGGATCTGCTGCGCTTCCTGGTTATTGCAGGAGGAGTTGCAAGGCTTGTTAG
AA sequence Show only first row Show all	>Lus10012014 pacid=23161400 polypeptide=Lus10012014 locus=Lus10012014.g ID=Lus10012014.BGIv1.0 annot-version=v1.0 MAAGWIPLFLFWISFLLHKSIAYPVTSSSAIDPSKVKQVSWKPRAFVYQGFLTDLECDHLISLAKSELKRSAVADNVSGQSQLSEVRTSSGMFIRKGKDP IVDGIEEKIAAWTFLPKENGEDIQVLRYEHGQKYDPHYDYFTDKVNIARGGHRVATVLMYLTDVQKGGETVFPSAEEPPRRRRAATKEEDLSECAKKGVA VRPRRGDALLFFSLHPTAVPDTSSLHAGCPVIEGEKWSATKWIHVSSFDKQIEVGGNCTDNNDSCERWAALGECTKNPEYMVGSAALPGYCRRSCKAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10012014 [exp]	0	1
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10017679 [exp]	1.7	0.8621
AT2G41150			unknown protein		Lus10022403 [exp]	5.7	0.8436
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10016271 [exp]	8.4	0.8253
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10010345 [exp]	8.8	0.8186
AT2G28720			Histone superfamily protein (....		Lus10017456 [exp]	9.2	0.8024
AT2G41475			Embryo-specific protein 3, (AT...		Lus10019416 [exp]	14.0	0.8011
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	15.5	0.8268
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Lus10013362 [exp]	16.4	0.8124
AT1G72510			Protein of unknown function (D...		Lus10008118 [exp]	16.5	0.8168
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10002339 [exp]	16.7	0.7953

Compare expression of checked genes

Lus10012014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.