Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12130 179 / 4e-57 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT5G06770 169 / 2e-53 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT2G25970 53 / 1e-08 KH domain-containing protein (.1) AT1G32360 52 / 3e-08 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT1G33680 49 / 3e-07 KH domain-containing protein (.1) AT3G19360 47 / 1e-06 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT2G35430 45 / 8e-06 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT4G10070 45 / 9e-06 KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021043 [exp] 189 / 2e-60 AT5G06770 262 / 1e-87 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10004183 [exp] 191 / 4e-60 AT5G06770 261 / 8e-86 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10016272 [exp] 169 / 5e-53 AT3G12130 229 / 5e-75 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012016 [exp] 81 / 6e-21 AT3G12130 73 / 2e-17 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012015 [exp] 76 / 1e-18 AT3G12130 66 / 1e-14 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10004573 [exp] 51 / 5e-08 AT1G32360 342 / 1e-116 Zinc finger (CCCH-type) family protein (.1) Lus10004445 [exp] 51 / 6e-08 AT2G25970 309 / 3e-100 KH domain-containing protein (.1) Lus10000486 [exp] 51 / 6e-08 AT1G32360 337 / 6e-115 Zinc finger (CCCH-type) family protein (.1) Lus10020998 [exp] 50 / 2e-07 AT2G25970 253 / 2e-76 KH domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046600 [exp] 173 / 2e-54 AT5G06770 265 / 2e-89 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.003G213200 [exp] 170 / 9e-53 AT5G06770 162 / 1e-48 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.001G013200 [exp] 167 / 9e-52 AT5G06770 169 / 2e-51 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.006G191900 [exp] 161 / 2e-49 AT3G12130 256 / 2e-85 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.018G055300 [exp] 55 / 3e-09 AT2G25970 319 / 9e-100 KH domain-containing protein (.1) Potri.006G231800 [exp] 54 / 6e-09 AT2G25970 393 / 5e-128 KH domain-containing protein (.1) Potri.003G093600 [exp] 50 / 1e-07 AT1G32360 353 / 2e-120 Zinc finger (CCCH-type) family protein (.1) Potri.001G140800 [exp] 50 / 1e-07 AT1G32360 355 / 3e-121 Zinc finger (CCCH-type) family protein (.1) Potri.004G169500 [exp] 47 / 1e-06 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1) Potri.009G130600 [exp] 46 / 3e-06 AT3G19360 276 / 9e-91 Zinc finger (CCCH-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10012017 pacid=23161480 polypeptide=Lus10012017 locus=Lus10012017.g ID=Lus10012017.BGIv1.0 annot-version=v1.0 ATGGGAGGACCACCAATGCCAGGAGGCCGTATGGGAGGAATGCGAATGGAGCCACACCAGCAGCCCGGTCCAGTCCCAGGATTCGGCGACACAACCACCA CCAAAATCAGTGTAGACGCTTCCCTTGCAGGGTCCATCATCGGGAAAGGCGGCGTCAACTCCAAGCAGATCTGTCGACAGACGGGAGCGAAGCTGTCGAT AAGGGACCACGAGACAGATCCCAACCTGAGAAACATCGAGCTGGACGGAACGCTCGAGCAGGTCGGTAGAGCCAGCGCAATGGTGAGAGAGCTGCTCGCA AACATTGGCCCACCGGGGTCTCAAGGTGGGAGACCCTCCGGACACACGGGTGGCGATAAGCAGCATCCAGGGAGTAACTACAAGACGAAGATATGCGAGA GGTTTATGAACGGGTCGTGCAGCTTCGGAGATAGATGTCACTTTGCCCACGGTGCTGCTGAGATGCGCAAGTCGGGTCCCGGAATGTAA
AA sequence Show only first row Show all	>Lus10012017 pacid=23161480 polypeptide=Lus10012017 locus=Lus10012017.g ID=Lus10012017.BGIv1.0 annot-version=v1.0 MGGPPMPGGRMGGMRMEPHQQPGPVPGFGDTTTTKISVDASLAGSIIGKGGVNSKQICRQTGAKLSIRDHETDPNLRNIELDGTLEQVGRASAMVRELLA NIGPPGSQGGRPSGHTGGDKQHPGSNYKTKICERFMNGSCSFGDRCHFAHGAAEMRKSGPGM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12130	C3HZnF		KH domain-containing protein /...		Lus10012017 [exp]	0	1
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10016131 [exp]	3.9	0.9222
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10000904 [exp]	4.2	0.9297
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	7.6	0.9328
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10030551 [exp]	8.1	0.9264
AT5G53800			unknown protein		Lus10014800 [exp]	9.2	0.9166
AT5G49210			unknown protein		Lus10032604 [exp]	11.0	0.9111
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10038513 [exp]	12.4	0.9105
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	13.4	0.9251
AT1G29220			transcriptional regulator fami...		Lus10029237 [exp]	13.5	0.8591
AT1G17070			GC-rich sequence DNA-binding f...		Lus10000930 [exp]	16.1	0.8925

Compare expression of checked genes

Lus10012017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.