Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06760 120 / 5e-35 AtLEA4-5, LEA4-5 Late Embryogenesis Abundant 4-5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016273 [exp] 282 / 6e-99 AT5G06760 120 / 3e-35 Late Embryogenesis Abundant 4-5 (.1) Lus10021044 [exp] 119 / 3e-33 AT5G06760 87 / 8e-21 Late Embryogenesis Abundant 4-5 (.1) Lus10004182 [exp] 108 / 6e-30 AT5G06760 87 / 1e-21 Late Embryogenesis Abundant 4-5 (.1) Lus10012009 [exp] 87 / 7e-23 AT5G06760 71 / 9e-17 Late Embryogenesis Abundant 4-5 (.1) Lus10016266 [exp] 81 / 2e-20 AT5G06760 68 / 1e-15 Late Embryogenesis Abundant 4-5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046350 [exp] 162 / 2e-51 AT5G06760 101 / 2e-27 Late Embryogenesis Abundant 4-5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03760 [flax] [poplar] LEA_1 Late embryogenesis abundant (LEA) group 1
Representative CDS sequence Show only first row Show all	>Lus10012018 pacid=23161414 polypeptide=Lus10012018 locus=Lus10012018.g ID=Lus10012018.BGIv1.0 annot-version=v1.0 ATGCAATCCATGAAGGAAACCGCTTCCAACATCGGCGCCTCCGCCAAGGCCGGCATGGAGAAGACCAAAGCCGCCGTCCAGGAGAAGGTGGAGAAGGTGT CAGCTCGCGATCCGGTGCAGAAGGACCTGGCGACGCAGAAGAAAGAAGCGAGGATGTTGGAAGCGGAGGCGATGAAGCAAGACGTGAAGACCCACAACGC CGCAACTAAGCAAGGAGAGCAGGTCTTCGGCAGCGGTAACGCCGGGACGAACTACACCTCCGGCGGGACAGGTGGAGTGATGGACACGTACAGCCACTCG ACCACCGGACGGCCGGGCTACCCTACAGGGACCCACCAGATGTCGGCCATGCCAGGGCATGGGACCGGGCAGCCTTACGGAGGACACGTGGATGAGGGAG TGGCTAGGGTCCACCCGTCCGGTCTGCCCGGGGAGCAGACCGGGCATAATACTCGTACCGGCGGGACGGGGACCGGGCACCTTCCCGGTTAA
AA sequence Show only first row Show all	>Lus10012018 pacid=23161414 polypeptide=Lus10012018 locus=Lus10012018.g ID=Lus10012018.BGIv1.0 annot-version=v1.0 MQSMKETASNIGASAKAGMEKTKAAVQEKVEKVSARDPVQKDLATQKKEARMLEAEAMKQDVKTHNAATKQGEQVFGSGNAGTNYTSGGTGGVMDTYSHS TTGRPGYPTGTHQMSAMPGHGTGQPYGGHVDEGVARVHPSGLPGEQTGHNTRTGGTGTGHLPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012018 [exp]	0	1
					Lus10039628 [exp]	1.7	0.8586
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10015060 [exp]	2.2	0.8528
AT5G10770			Eukaryotic aspartyl protease f...		Lus10026243 [exp]	3.5	0.8502
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10025736 [exp]	6.7	0.8289
					Lus10034724 [exp]	8.4	0.8239
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10008608 [exp]	9.8	0.8749
AT5G38760			Late embryogenesis abundant pr...		Lus10034100 [exp]	13.0	0.7718
					Lus10000538 [exp]	13.7	0.8125
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10016273 [exp]	13.9	0.8747
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027937 [exp]	14.7	0.7878

Compare expression of checked genes

Lus10012018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.