Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05990 500 / 1e-177 ENR1, MOD1 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016274 [exp] 696 / 0 AT2G05990 545 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10021040 [exp] 578 / 0 AT2G05990 559 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10004186 [exp] 571 / 0 AT2G05990 554 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10004984 [exp] 51 / 5e-07 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10018323 [exp] 46 / 3e-05 AT3G12800 395 / 4e-139 short-chain dehydrogenase-reductase B (.1) Lus10017129 [exp] 44 / 0.0001 AT3G12800 391 / 7e-138 short-chain dehydrogenase-reductase B (.1) Lus10031746 [exp] 44 / 0.0002 AT3G12800 463 / 4e-166 short-chain dehydrogenase-reductase B (.1) Lus10031170 [exp] 43 / 0.0002 AT3G12800 454 / 8e-163 short-chain dehydrogenase-reductase B (.1) Lus10006699 [exp] 43 / 0.0003 AT3G46170 404 / 2e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046701 [exp] 559 / 0 AT2G05990 526 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G013500 [exp] 530 / 0 AT2G05990 553 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T014016 [exp] 525 / 0 AT2G05990 549 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G212700 [exp] 522 / 0 AT2G05990 546 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G125900 [exp] 42 / 0.0005 AT3G12800 421 / 9e-150 short-chain dehydrogenase-reductase B (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012019 pacid=23161419 polypeptide=Lus10012019 locus=Lus10012019.g ID=Lus10012019.BGIv1.0 annot-version=v1.0 ATGGCAACTCTCACTACTGCAGGTGTGGCAACAGCCATGACAGGCAGAAGAATCATCACTTTTCGACATAAAGTATTCGATCCGGTGATGACAGCAAGTT TGAGTACACGGATGGCATCCACGACTAGCCTTACAATCTCCTTGAGCAAGCCATTGTTTCACAAGCCTATGATTATTGTGCCTCTGAAATGTAGAAGAAC AATTATCCCGGTTCGAGCAATGTCATCGACAAATGAGACTAGTCCCTTGCCAGGACTTCCCATCGATTTACGAGGTAAGAGAGCTTTTGTTGCTGGTGTA GCAGACGACAATGGATACGGTTGGGCAATAGCAAAATCACTTGCTGCAGCTGGTGCGGAAATTCTTCTTGGTACATGGGTGCCTGCTTTGAACATATTCG AAAGCAGCCTACGACGTGGGAAGTTTGACAAATCGCGTGTCTTACCCGACGGTTCTCTAATGGAAATCACTAAAGTGTATCCTATGGATGCAGTCTTCGA TTGCCCTGAGGATGTTCCTGAAGATATTAAAACAAACAAGCGCTATGCTGGATCGTCGAATTGGACCGTTAAGGAGCTTGCTGAATCGGTGAAGCAGGAT TTCGGAAGCATTGACATCCTCGTCCACTCGCTTGCTAACGGGCCAGAGGTTGTCAAGCCACTTCTCGAAACGTCGAGGAATGGTTACCTTGCAGCCATCT CTGCATCAAGTTACTCATTCATTTCCCTACTGCAGAACTTCATTCCTATAATGAACCCAGGTGGTGCAACTATTTCCTTGACATACATTGCTTCTGAAAG GATAATTCCCGGTTATGGTGGCGGGATGAGCTCAGCCAAGGCCGCTTTAGAGAGTGACACACGTGTAAGATTATCCCCGAAATGTCTGCAAATGTATGTT CATACCACTGTGTCTCACCACATGGTTCACTTTCAGGTGCTAGCCTTTGAAGCTGGAAGAAAGCACAAAATCAGAGTCAACACAATATCTGCAGGTCCGT TGAGAAGCCGAGCTGCGAAAGCAATCGGCTTTATCGATATGATGATTGATTACTCGTCGGCCAATGCACCCCTCCAGAAAGAGGTGACTGCAGAGGAAGT AGGGAATGCAGCAGCTTTCCTGGTTTCACCATTGGCATCAGCCATCACAGGGACAGTTGTTTACGTGGACAATGGTTTGAATGCTATGGGAGTTGGAGTC GATAGTCCCCTTTTCGAGAGCCTTAACATCCCTAAAGCCAACTAG
AA sequence Show only first row Show all	>Lus10012019 pacid=23161419 polypeptide=Lus10012019 locus=Lus10012019.g ID=Lus10012019.BGIv1.0 annot-version=v1.0 MATLTTAGVATAMTGRRIITFRHKVFDPVMTASLSTRMASTTSLTISLSKPLFHKPMIIVPLKCRRTIIPVRAMSSTNETSPLPGLPIDLRGKRAFVAGV ADDNGYGWAIAKSLAAAGAEILLGTWVPALNIFESSLRRGKFDKSRVLPDGSLMEITKVYPMDAVFDCPEDVPEDIKTNKRYAGSSNWTVKELAESVKQD FGSIDILVHSLANGPEVVKPLLETSRNGYLAAISASSYSFISLLQNFIPIMNPGGATISLTYIASERIIPGYGGGMSSAKAALESDTRVRLSPKCLQMYV HTTVSHHMVHFQVLAFEAGRKHKIRVNTISAGPLRSRAAKAIGFIDMMIDYSSANAPLQKEVTAEEVGNAAAFLVSPLASAITGTVVYVDNGLNAMGVGV DSPLFESLNIPKAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10012019 [exp]	0	1
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036632 [exp]	1.4	0.9494
AT4G21770			Pseudouridine synthase family ...		Lus10007657 [exp]	3.2	0.9451
AT2G26350		PEX10, ATPEX10	peroxin 10 (.1)		Lus10020007 [exp]	3.5	0.9307
AT3G51870			Mitochondrial substrate carrie...		Lus10035509 [exp]	3.5	0.9443
AT4G18130		PHYE	phytochrome E (.1)		Lus10004592 [exp]	4.5	0.9402
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031566 [exp]	4.5	0.9336
AT1G68890			magnesium ion binding;thiamin ...		Lus10030915 [exp]	4.9	0.9406
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001332 [exp]	7.5	0.9391
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042231 [exp]	7.7	0.9399
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Lus10009197 [exp]	8.5	0.9389

Compare expression of checked genes

Lus10012019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.